Gymnodraco acuticeps (Antarctic dragonfish)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Neoteleostei; Eurypterygia; Ctenosquamata; Acanthomorphata;

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 39919 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6P8TVL0|A0A6P8TVL0_GYMAC malectin OS=Gymnodraco acuticeps OX=8218 GN=mlec PE=3 SV=1
MM1 pKa = 7.7SYY3 pKa = 10.7CKK5 pKa = 10.08QEE7 pKa = 3.98GKK9 pKa = 10.57DD10 pKa = 3.37RR11 pKa = 11.84IIFVTKK17 pKa = 9.62EE18 pKa = 3.64DD19 pKa = 4.02HH20 pKa = 6.28EE21 pKa = 4.77APSNAEE27 pKa = 4.72LIADD31 pKa = 4.71DD32 pKa = 5.03PDD34 pKa = 4.61DD35 pKa = 4.56PYY37 pKa = 11.6EE38 pKa = 4.13EE39 pKa = 4.29QGLILANGDD48 pKa = 3.78INWNCPCLGGMASGPCGSQFKK69 pKa = 10.12EE70 pKa = 4.0AFSCFHH76 pKa = 6.08YY77 pKa = 10.87SKK79 pKa = 11.23EE80 pKa = 4.0EE81 pKa = 3.96LKK83 pKa = 11.19GSDD86 pKa = 4.22CIDD89 pKa = 3.5NFRR92 pKa = 11.84GMQEE96 pKa = 4.27CMQKK100 pKa = 10.35YY101 pKa = 9.4PEE103 pKa = 5.35LYY105 pKa = 9.17PQEE108 pKa = 4.07EE109 pKa = 4.55DD110 pKa = 3.78KK111 pKa = 11.23EE112 pKa = 4.58SSSEE116 pKa = 4.05AEE118 pKa = 4.33SNSGSGSAAPTEE130 pKa = 5.16GSASPPEE137 pKa = 4.42TDD139 pKa = 4.04SPPAAATTPASEE151 pKa = 4.4ATPPAADD158 pKa = 3.76ATPPAADD165 pKa = 3.64ATPAADD171 pKa = 4.0ATPPAADD178 pKa = 4.41ASPDD182 pKa = 3.63SASPTEE188 pKa = 4.19TQSASS193 pKa = 3.1

Molecular weight: 20.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6P8WKT5|A0A6P8WKT5_GYMAC b(0 +)-type amino acid transporter 1 OS=Gymnodraco acuticeps OX=8218 GN=slc7a9 PE=4 SV=1
MM1 pKa = 7.4ATRR4 pKa = 11.84SQPMSHH10 pKa = 6.2RR11 pKa = 11.84TPTGRR16 pKa = 11.84GSSFAIIITAACDD29 pKa = 3.52QEE31 pKa = 5.69SSVAPSNTEE40 pKa = 3.54QRR42 pKa = 11.84KK43 pKa = 7.85KK44 pKa = 9.29TIQCQPADD52 pKa = 3.04GRR54 pKa = 11.84TRR56 pKa = 11.84QKK58 pKa = 10.43NGSRR62 pKa = 11.84TRR64 pKa = 11.84QKK66 pKa = 10.1NGSRR70 pKa = 11.84TRR72 pKa = 11.84QKK74 pKa = 10.1NGSRR78 pKa = 11.84TRR80 pKa = 11.84QKK82 pKa = 10.1NGSRR86 pKa = 11.84TRR88 pKa = 11.84QKK90 pKa = 10.1NGSRR94 pKa = 11.84TRR96 pKa = 11.84QKK98 pKa = 10.1NGSRR102 pKa = 11.84TRR104 pKa = 11.84QKK106 pKa = 10.1NGSRR110 pKa = 11.84TRR112 pKa = 11.84QKK114 pKa = 10.1NGSRR118 pKa = 11.84TRR120 pKa = 11.84QKK122 pKa = 10.1NGSRR126 pKa = 11.84TRR128 pKa = 11.84QKK130 pKa = 10.1NGSRR134 pKa = 11.84TRR136 pKa = 11.84QKK138 pKa = 10.1NGSRR142 pKa = 11.84TRR144 pKa = 11.84QKK146 pKa = 10.1NGSRR150 pKa = 11.84TRR152 pKa = 11.84QKK154 pKa = 10.1NGSRR158 pKa = 11.84TRR160 pKa = 11.84QKK162 pKa = 10.1NGSRR166 pKa = 11.84TRR168 pKa = 11.84QKK170 pKa = 10.1NGSRR174 pKa = 11.84TRR176 pKa = 11.84QKK178 pKa = 10.1NGSRR182 pKa = 11.84TRR184 pKa = 11.84QKK186 pKa = 9.96TGGTRR191 pKa = 11.84QKK193 pKa = 10.63NGRR196 pKa = 11.84GAQQKK201 pKa = 9.53NGSRR205 pKa = 11.84THH207 pKa = 5.92HH208 pKa = 6.04RR209 pKa = 11.84NGRR212 pKa = 11.84EE213 pKa = 3.82TKK215 pKa = 10.43GRR217 pKa = 3.62

Molecular weight: 24.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24714

15205

39919

28106559

31

26292

704.1

78.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.527 ± 0.011

2.092 ± 0.01

5.278 ± 0.007

7.209 ± 0.017

3.359 ± 0.007

6.351 ± 0.018

2.628 ± 0.007

4.204 ± 0.009

5.723 ± 0.017

9.26 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.408 ± 0.005

3.843 ± 0.008

5.956 ± 0.017

4.902 ± 0.013

5.657 ± 0.011

9.078 ± 0.017

5.734 ± 0.012

6.15 ± 0.01

1.069 ± 0.004

2.566 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski