Arenimonas sp. 3729k

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2417 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B2ZAZ9|A0A5B2ZAZ9_9GAMM Succinate dehydrogenase cytochrome b556 subunit OS=Arenimonas sp. 3729k OX=2608255 GN=sdhC PE=3 SV=1
MM1 pKa = 7.66SSTDD5 pKa = 2.84TATAYY10 pKa = 7.52RR11 pKa = 11.84TWMCVVCGFTYY22 pKa = 10.71DD23 pKa = 3.42EE24 pKa = 4.41AAGLPEE30 pKa = 4.46EE31 pKa = 5.49GIAPGTRR38 pKa = 11.84WEE40 pKa = 5.59DD41 pKa = 3.48IPDD44 pKa = 3.5DD45 pKa = 4.38WVCPDD50 pKa = 4.01CGVTKK55 pKa = 10.46EE56 pKa = 4.2DD57 pKa = 3.92FEE59 pKa = 4.61MVPVAA64 pKa = 5.08

Molecular weight: 7.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B2ZDW6|A0A5B2ZDW6_9GAMM 50S ribosomal protein L30 OS=Arenimonas sp. 3729k OX=2608255 GN=rpmD PE=3 SV=1
MM1 pKa = 7.05ATKK4 pKa = 10.34KK5 pKa = 10.11AAKK8 pKa = 10.0KK9 pKa = 8.64PAKK12 pKa = 9.72KK13 pKa = 9.81AAKK16 pKa = 9.99KK17 pKa = 9.87SVKK20 pKa = 9.86KK21 pKa = 10.33AAAKK25 pKa = 9.71KK26 pKa = 10.04AVRR29 pKa = 11.84KK30 pKa = 8.8VAKK33 pKa = 9.5KK34 pKa = 10.31AKK36 pKa = 9.64KK37 pKa = 9.64AVKK40 pKa = 10.0KK41 pKa = 9.58VAKK44 pKa = 9.94KK45 pKa = 9.19VAKK48 pKa = 10.07KK49 pKa = 9.17ATRR52 pKa = 11.84KK53 pKa = 8.32PARR56 pKa = 11.84KK57 pKa = 8.79AAKK60 pKa = 9.82KK61 pKa = 9.91KK62 pKa = 9.53AAKK65 pKa = 9.82KK66 pKa = 8.84ATRR69 pKa = 11.84KK70 pKa = 8.34PARR73 pKa = 11.84KK74 pKa = 8.75AAKK77 pKa = 9.96KK78 pKa = 10.04KK79 pKa = 8.76VAKK82 pKa = 10.07KK83 pKa = 9.11ATRR86 pKa = 11.84KK87 pKa = 8.32PARR90 pKa = 11.84KK91 pKa = 8.75AAKK94 pKa = 9.96KK95 pKa = 10.11KK96 pKa = 8.77VAKK99 pKa = 10.01KK100 pKa = 10.08AARR103 pKa = 11.84KK104 pKa = 7.3PAKK107 pKa = 10.07KK108 pKa = 9.91AVKK111 pKa = 9.89KK112 pKa = 10.03AAKK115 pKa = 10.03KK116 pKa = 8.68PAKK119 pKa = 9.74KK120 pKa = 9.92KK121 pKa = 9.95AARR124 pKa = 11.84KK125 pKa = 8.24PAAKK129 pKa = 9.81KK130 pKa = 8.32PAPMMPAAPVAPALL144 pKa = 4.04

Molecular weight: 15.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2417

0

2417

808156

36

2205

334.4

36.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.429 ± 0.074

0.852 ± 0.015

5.453 ± 0.033

6.2 ± 0.046

3.285 ± 0.03

8.981 ± 0.045

2.144 ± 0.025

3.65 ± 0.034

2.325 ± 0.043

11.726 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.078 ± 0.025

2.054 ± 0.03

5.763 ± 0.038

3.269 ± 0.029

8.87 ± 0.057

4.535 ± 0.035

4.102 ± 0.036

7.492 ± 0.044

1.601 ± 0.024

2.192 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski