Riverside virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140D049|A0A140D049_9RHAB Glycoprotein OS=Riverside virus 1 OX=1803263 GN=G PE=4 SV=1
MM1 pKa = 7.51AVNRR5 pKa = 11.84PIKK8 pKa = 10.14RR9 pKa = 11.84ISDD12 pKa = 3.7HH13 pKa = 7.19PEE15 pKa = 3.52LSPEE19 pKa = 4.14VVHH22 pKa = 7.09FDD24 pKa = 3.01IGTDD28 pKa = 3.43RR29 pKa = 11.84PIGYY33 pKa = 8.68PSAWFAQNVNDD44 pKa = 4.7KK45 pKa = 8.82PTIMMIPDD53 pKa = 3.75ASVTRR58 pKa = 11.84EE59 pKa = 3.86QLHH62 pKa = 5.2AAIRR66 pKa = 11.84AGLLTGTVDD75 pKa = 2.74HH76 pKa = 6.71RR77 pKa = 11.84FVVRR81 pKa = 11.84FLYY84 pKa = 10.99NEE86 pKa = 4.04FNLVPGLLNSDD97 pKa = 2.69WRR99 pKa = 11.84SFGRR103 pKa = 11.84NLGNRR108 pKa = 11.84GEE110 pKa = 4.54RR111 pKa = 11.84IGPSSIIVPRR121 pKa = 11.84EE122 pKa = 3.92QEE124 pKa = 4.24SVPALVAGNGLMDD137 pKa = 4.22DD138 pKa = 4.12QEE140 pKa = 4.33VLRR143 pKa = 11.84CIILICSVYY152 pKa = 10.07RR153 pKa = 11.84AGPISRR159 pKa = 11.84VDD161 pKa = 3.3YY162 pKa = 10.52RR163 pKa = 11.84DD164 pKa = 3.28QVLEE168 pKa = 4.04NVGNLLTPLGMDD180 pKa = 3.06QDD182 pKa = 4.01TDD184 pKa = 3.17IGDD187 pKa = 4.55IIDD190 pKa = 4.64KK191 pKa = 9.77CKK193 pKa = 10.43QWIAYY198 pKa = 8.08QPYY201 pKa = 7.75VQMMATIDD209 pKa = 3.44MFLNEE214 pKa = 4.98FPFHH218 pKa = 7.29PYY220 pKa = 8.59SQARR224 pKa = 11.84IGTIVTRR231 pKa = 11.84FKK233 pKa = 11.24DD234 pKa = 3.84CAALIATRR242 pKa = 11.84MITQCLGLKK251 pKa = 10.12FPEE254 pKa = 3.98FAEE257 pKa = 4.74WIWTSRR263 pKa = 11.84CADD266 pKa = 3.23QFEE269 pKa = 4.76RR270 pKa = 11.84IIKK273 pKa = 10.2GDD275 pKa = 3.55EE276 pKa = 4.06EE277 pKa = 3.97MDD279 pKa = 3.59EE280 pKa = 4.13PRR282 pKa = 11.84SYY284 pKa = 11.99SMYY287 pKa = 10.79FMDD290 pKa = 5.99LGLSSKK296 pKa = 10.5SPYY299 pKa = 9.2SASVNLDD306 pKa = 2.79LHH308 pKa = 6.51YY309 pKa = 10.58FFHH312 pKa = 6.68TLGVSAGLEE321 pKa = 3.74RR322 pKa = 11.84SKK324 pKa = 10.68RR325 pKa = 11.84ARR327 pKa = 11.84VVGDD331 pKa = 3.51PEE333 pKa = 4.28VNNIISNAVVMHH345 pKa = 5.47YY346 pKa = 11.37VMGRR350 pKa = 11.84FATLSQQFGVDD361 pKa = 3.57GEE363 pKa = 4.36GDD365 pKa = 3.56EE366 pKa = 6.52LEE368 pKa = 4.99DD369 pKa = 3.68EE370 pKa = 4.95NNRR373 pKa = 11.84PMPEE377 pKa = 4.24GEE379 pKa = 4.12PQEE382 pKa = 4.54KK383 pKa = 10.47DD384 pKa = 3.09SSLWLAYY391 pKa = 9.73IMRR394 pKa = 11.84NNGKK398 pKa = 9.25VPDD401 pKa = 4.08YY402 pKa = 10.51IVRR405 pKa = 11.84KK406 pKa = 9.65VATEE410 pKa = 4.23WEE412 pKa = 4.26QNPACRR418 pKa = 11.84DD419 pKa = 3.55GTIGKK424 pKa = 9.39ALYY427 pKa = 10.14DD428 pKa = 3.36KK429 pKa = 11.11SGPLLLNN436 pKa = 4.1

Molecular weight: 49.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140D058|A0A140D058_9RHAB Matrix protein OS=Riverside virus 1 OX=1803263 GN=M PE=4 SV=1
MM1 pKa = 7.54SIIKK5 pKa = 9.9IVRR8 pKa = 11.84VDD10 pKa = 3.5ALLEE14 pKa = 3.86MRR16 pKa = 11.84FRR18 pKa = 11.84EE19 pKa = 4.22PPRR22 pKa = 11.84TYY24 pKa = 11.07KK25 pKa = 10.74DD26 pKa = 3.47LLSSLEE32 pKa = 4.24IIKK35 pKa = 10.43DD36 pKa = 3.57DD37 pKa = 3.56YY38 pKa = 11.23KK39 pKa = 11.52GYY41 pKa = 11.24VNDD44 pKa = 4.41KK45 pKa = 10.59EE46 pKa = 4.47YY47 pKa = 10.8ILLFYY52 pKa = 9.94TLAGFTCKK60 pKa = 9.9YY61 pKa = 8.1RR62 pKa = 11.84HH63 pKa = 5.2QVGAFYY69 pKa = 10.26HH70 pKa = 5.42YY71 pKa = 10.13RR72 pKa = 11.84GTINGVFKK80 pKa = 10.75IKK82 pKa = 9.11MCSMSPIFPLTYY94 pKa = 10.09DD95 pKa = 3.61YY96 pKa = 11.4DD97 pKa = 4.28GEE99 pKa = 4.86GIGLIPNLLVSFHH112 pKa = 6.12LTSEE116 pKa = 4.28EE117 pKa = 4.7SNMSPTSIVDD127 pKa = 3.72YY128 pKa = 10.64IRR130 pKa = 11.84SRR132 pKa = 11.84SPNKK136 pKa = 9.09YY137 pKa = 9.55RR138 pKa = 11.84KK139 pKa = 9.02RR140 pKa = 11.84HH141 pKa = 4.89ALKK144 pKa = 10.74LSIFKK149 pKa = 10.19PYY151 pKa = 10.46AITVEE156 pKa = 4.19SEE158 pKa = 3.95KK159 pKa = 11.18DD160 pKa = 3.3CLSIKK165 pKa = 10.65KK166 pKa = 9.84NN167 pKa = 3.41

Molecular weight: 19.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3656

167

2122

731.2

82.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.787 ± 0.74

1.422 ± 0.278

5.771 ± 0.356

5.388 ± 0.714

4.212 ± 0.173

6.072 ± 0.459

2.571 ± 0.436

6.838 ± 0.544

6.154 ± 0.637

9.874 ± 0.863

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.489 ± 0.34

4.814 ± 0.353

5.17 ± 0.62

3.556 ± 0.44

5.142 ± 0.467

8.124 ± 0.755

6.209 ± 0.679

5.826 ± 0.364

1.723 ± 0.393

3.857 ± 0.673
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski