Mucilaginibacter yixingensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4440 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T5JEF2|A0A2T5JEF2_9SPHI RNA polymerase ECF family sigma subunit OS=Mucilaginibacter yixingensis OX=1295612 GN=C8P68_10122 PE=3 SV=1
MM1 pKa = 7.7PNIKK5 pKa = 10.24LSYY8 pKa = 9.91FYY10 pKa = 10.52RR11 pKa = 11.84DD12 pKa = 3.06SANYY16 pKa = 9.96KK17 pKa = 9.59VFNNVIFFNDD27 pKa = 3.09QGLDD31 pKa = 3.56LVSVEE36 pKa = 5.61DD37 pKa = 4.16IIKK40 pKa = 10.71SKK42 pKa = 11.02LIDD45 pKa = 3.5QTWFYY50 pKa = 10.21PGEE53 pKa = 3.84WHH55 pKa = 7.52LPDD58 pKa = 4.94LFSGYY63 pKa = 9.99FDD65 pKa = 5.59PNIDD69 pKa = 4.0PAWHH73 pKa = 6.18EE74 pKa = 4.39FEE76 pKa = 4.6SLDD79 pKa = 4.83YY80 pKa = 11.24SDD82 pKa = 6.06EE83 pKa = 4.95DD84 pKa = 3.92LLCDD88 pKa = 3.15IRR90 pKa = 11.84LSVFLNNII98 pKa = 3.41

Molecular weight: 11.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T5JEB2|A0A2T5JEB2_9SPHI Helix-turn-helix protein OS=Mucilaginibacter yixingensis OX=1295612 GN=C8P68_1019 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.39KK6 pKa = 9.62RR7 pKa = 11.84KK8 pKa = 6.72RR9 pKa = 11.84HH10 pKa = 5.17KK11 pKa = 10.05MATHH15 pKa = 6.02KK16 pKa = 10.34RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.26NRR25 pKa = 11.84HH26 pKa = 4.71KK27 pKa = 10.87KK28 pKa = 9.36KK29 pKa = 10.77

Molecular weight: 3.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4440

0

4440

1570352

29

3133

353.7

39.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.167 ± 0.033

0.844 ± 0.011

5.548 ± 0.027

5.058 ± 0.04

4.661 ± 0.024

7.074 ± 0.037

2.05 ± 0.017

6.675 ± 0.033

6.37 ± 0.031

9.363 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.353 ± 0.017

5.484 ± 0.035

4.063 ± 0.027

4.034 ± 0.024

4.172 ± 0.024

6.028 ± 0.032

6.056 ± 0.043

6.528 ± 0.027

1.255 ± 0.015

4.218 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski