Gordonia phage Anon

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 101 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2WP92|A0A5Q2WP92_9CAUD Uncharacterized protein OS=Gordonia phage Anon OX=2653744 GN=6 PE=4 SV=1
MM1 pKa = 7.3ATLLSILFIFFPAMVDD17 pKa = 3.6DD18 pKa = 4.43VPEE21 pKa = 4.51VIADD25 pKa = 3.69QMPVCQNEE33 pKa = 4.11DD34 pKa = 3.63GNPDD38 pKa = 3.59GKK40 pKa = 10.09PCIWYY45 pKa = 9.77GGEE48 pKa = 4.14HH49 pKa = 6.12GPEE52 pKa = 3.95GRR54 pKa = 11.84WYY56 pKa = 10.63VDD58 pKa = 2.92SSVYY62 pKa = 10.22RR63 pKa = 3.83

Molecular weight: 7.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2WLH9|A0A5Q2WLH9_9CAUD Scaffolding protein OS=Gordonia phage Anon OX=2653744 GN=15 PE=4 SV=1
MM1 pKa = 7.15NWAGSTRR8 pKa = 11.84RR9 pKa = 11.84QRR11 pKa = 11.84LPEE14 pKa = 4.27DD15 pKa = 3.05WEE17 pKa = 4.28LNYY20 pKa = 10.43RR21 pKa = 11.84LPVLSRR27 pKa = 11.84DD28 pKa = 3.11RR29 pKa = 11.84WLCQINGPGCTRR41 pKa = 11.84AATDD45 pKa = 2.89VDD47 pKa = 4.28HH48 pKa = 7.59IKK50 pKa = 10.86RR51 pKa = 11.84GDD53 pKa = 3.28NHH55 pKa = 6.85DD56 pKa = 3.96RR57 pKa = 11.84SNLQAVCFTCHH68 pKa = 5.55NKK70 pKa = 9.83KK71 pKa = 10.55SSAEE75 pKa = 3.89GVAAKK80 pKa = 10.5AKK82 pKa = 10.43LKK84 pKa = 9.75AQRR87 pKa = 11.84RR88 pKa = 11.84RR89 pKa = 11.84PTEE92 pKa = 3.51RR93 pKa = 11.84HH94 pKa = 5.15PGQRR98 pKa = 3.45

Molecular weight: 11.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

101

0

101

16280

32

818

161.2

17.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.441 ± 0.307

0.891 ± 0.128

6.665 ± 0.189

7.058 ± 0.303

3.323 ± 0.176

8.077 ± 0.369

2.131 ± 0.148

5.104 ± 0.161

4.595 ± 0.206

7.991 ± 0.324

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.488 ± 0.133

3.305 ± 0.167

5.344 ± 0.245

3.421 ± 0.172

6.069 ± 0.218

5.682 ± 0.171

6.357 ± 0.221

6.935 ± 0.229

1.941 ± 0.138

3.182 ± 0.157
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski