Gordonia phage Cozz

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus Cozz

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 68 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160DDC4|A0A160DDC4_9CAUD Portal protein OS=Gordonia phage Cozz OX=1838066 GN=5 PE=4 SV=1
MM1 pKa = 7.29NNEE4 pKa = 4.07LTLSIATTHH13 pKa = 6.62HH14 pKa = 7.01DD15 pKa = 3.8FVAALSLDD23 pKa = 4.31DD24 pKa = 5.58GDD26 pKa = 4.49VALNCAFSSLEE37 pKa = 3.92DD38 pKa = 3.38MFAEE42 pKa = 4.26VAYY45 pKa = 10.44DD46 pKa = 3.39VTPEE50 pKa = 3.96LTIDD54 pKa = 3.5YY55 pKa = 10.68ALLFTTALVAADD67 pKa = 5.04FIYY70 pKa = 11.01ANYY73 pKa = 10.29

Molecular weight: 7.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A166Y4Y2|A0A166Y4Y2_9CAUD Minor tail protein OS=Gordonia phage Cozz OX=1838066 GN=17 PE=4 SV=1
MM1 pKa = 7.41GKK3 pKa = 10.35AGTVRR8 pKa = 11.84LNRR11 pKa = 11.84KK12 pKa = 7.23GFRR15 pKa = 11.84EE16 pKa = 3.83IRR18 pKa = 11.84SAPKK22 pKa = 10.46LIRR25 pKa = 11.84KK26 pKa = 8.55IDD28 pKa = 4.13KK29 pKa = 8.89ITGGIADD36 pKa = 4.55RR37 pKa = 11.84ANANLDD43 pKa = 3.35EE44 pKa = 5.31PGYY47 pKa = 8.94KK48 pKa = 9.53TSSQEE53 pKa = 3.56GAARR57 pKa = 11.84PQGRR61 pKa = 11.84HH62 pKa = 5.46RR63 pKa = 11.84GTVITATQEE72 pKa = 4.09AKK74 pKa = 10.51EE75 pKa = 4.23DD76 pKa = 3.68NANNNTLLKK85 pKa = 9.91EE86 pKa = 4.51FYY88 pKa = 9.94RR89 pKa = 11.84ARR91 pKa = 11.84GKK93 pKa = 10.37

Molecular weight: 10.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

0

68

14785

31

1712

217.4

24.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.976 ± 0.668

0.791 ± 0.145

6.48 ± 0.33

6.338 ± 0.465

3.172 ± 0.145

8.13 ± 0.44

2.049 ± 0.204

4.843 ± 0.203

5.188 ± 0.241

8.34 ± 0.227

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.658 ± 0.141

3.24 ± 0.206

5.269 ± 0.248

3.666 ± 0.181

6.459 ± 0.435

5.668 ± 0.267

5.986 ± 0.264

6.892 ± 0.199

2.076 ± 0.145

2.78 ± 0.203
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski