Cymbidium chlorotic mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0G4DCT1|A0A0G4DCT1_9VIRU Capsid protein OS=Cymbidium chlorotic mosaic virus OX=1602124 PE=3 SV=1
MM1 pKa = 7.52TIDD4 pKa = 5.04IIVKK8 pKa = 10.5NNTTPIGSKK17 pKa = 10.14KK18 pKa = 9.85IAVDD22 pKa = 4.19EE23 pKa = 4.3IFSLEE28 pKa = 3.94VFLQGKK34 pKa = 7.96FSWGSVATVEE44 pKa = 4.49LTFEE48 pKa = 4.4CRR50 pKa = 11.84ACGYY54 pKa = 8.99ATVRR58 pKa = 11.84DD59 pKa = 4.01VEE61 pKa = 4.29FSGFLLRR68 pKa = 11.84DD69 pKa = 3.16RR70 pKa = 11.84SGEE73 pKa = 3.78YY74 pKa = 9.41QEE76 pKa = 4.71YY77 pKa = 10.27IEE79 pKa = 4.35RR80 pKa = 11.84LVRR83 pKa = 11.84FDD85 pKa = 4.17SSEE88 pKa = 4.13CQEE91 pKa = 4.25CACRR95 pKa = 11.84HH96 pKa = 5.61KK97 pKa = 11.04LCDD100 pKa = 3.49YY101 pKa = 7.6RR102 pKa = 11.84TCEE105 pKa = 4.64DD106 pKa = 4.55PEE108 pKa = 5.31CPDD111 pKa = 3.51HH112 pKa = 7.51SDD114 pKa = 3.75KK115 pKa = 10.95FFCEE119 pKa = 5.47VGWCWCTNPPQTT131 pKa = 4.86

Molecular weight: 15.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0G4DCX7|A0A0G4DCX7_9VIRU N-terminal protein OS=Cymbidium chlorotic mosaic virus OX=1602124 PE=4 SV=1
MM1 pKa = 7.95AKK3 pKa = 9.79RR4 pKa = 11.84KK5 pKa = 8.95SRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84PAKK12 pKa = 7.81VTEE15 pKa = 4.27ILVEE19 pKa = 4.17APTNQSRR26 pKa = 11.84ARR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84SSMNPSTGLRR40 pKa = 11.84LSRR43 pKa = 11.84PVTMPAAAGIVFGKK57 pKa = 9.87SVPRR61 pKa = 11.84LRR63 pKa = 11.84SEE65 pKa = 4.24GVSTILTNCEE75 pKa = 3.63VNLGVVVTTGATQVVRR91 pKa = 11.84EE92 pKa = 4.18CAPFEE97 pKa = 4.21VGQWLAGIAANFSKK111 pKa = 9.97WRR113 pKa = 11.84WLRR116 pKa = 11.84LRR118 pKa = 11.84FLYY121 pKa = 10.62VPYY124 pKa = 10.54CPTTLQGSLHH134 pKa = 6.23MGFVYY139 pKa = 10.62DD140 pKa = 5.81DD141 pKa = 4.66LDD143 pKa = 4.43SNPTTVEE150 pKa = 3.74AMSTLSGYY158 pKa = 6.37TTSPLWNGAQCAPALSSVKK177 pKa = 10.45SVVPTGSVCAVLDD190 pKa = 3.61VTRR193 pKa = 11.84LSKK196 pKa = 10.1PWYY199 pKa = 9.08PFLTAAGYY207 pKa = 9.19TDD209 pKa = 3.55VTEE212 pKa = 4.34TTTALGNMYY221 pKa = 10.57SPGKK225 pKa = 10.28LVILTIDD232 pKa = 4.14GSSSTAVGCGRR243 pKa = 11.84LYY245 pKa = 10.8AQYY248 pKa = 9.84EE249 pKa = 4.07IEE251 pKa = 4.91LIEE254 pKa = 5.13PIASSLNRR262 pKa = 3.66

Molecular weight: 28.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1878

131

940

469.5

51.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.029 ± 0.476

2.396 ± 0.525

3.94 ± 0.555

6.337 ± 0.57

2.929 ± 0.383

7.987 ± 0.366

1.278 ± 0.193

4.846 ± 0.35

4.26 ± 0.35

10.064 ± 0.457

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.023 ± 0.12

3.994 ± 0.447

4.846 ± 0.369

2.716 ± 0.195

5.857 ± 0.311

10.011 ± 0.419

6.337 ± 1.032

8.04 ± 0.612

2.449 ± 0.284

2.662 ± 0.291
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski