Shigella phage Sd1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Wilsonroadvirus; Shigella virus Sd1

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 73 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A291AYQ6|A0A291AYQ6_9CAUD Putative major capsid protein OS=Shigella phage Sd1 OX=2024313 GN=Sd1_gp44 PE=4 SV=1
MM1 pKa = 7.17NAIIINNEE9 pKa = 2.96IKK11 pKa = 10.35YY12 pKa = 10.96DD13 pKa = 3.78KK14 pKa = 10.71DD15 pKa = 3.59ALSLADD21 pKa = 3.55MGYY24 pKa = 10.19EE25 pKa = 3.66IGEE28 pKa = 4.29KK29 pKa = 10.18VHH31 pKa = 7.17LSVCQLSGEE40 pKa = 4.28MYY42 pKa = 9.68LTVKK46 pKa = 10.27QDD48 pKa = 3.52LVIDD52 pKa = 5.01GIVAVYY58 pKa = 9.98AGEE61 pKa = 4.42EE62 pKa = 3.96ICVSDD67 pKa = 5.75DD68 pKa = 3.67EE69 pKa = 5.04VEE71 pKa = 4.19MMAA74 pKa = 5.58

Molecular weight: 8.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A291AYK4|A0A291AYK4_9CAUD HNH homing endonuclease OS=Shigella phage Sd1 OX=2024313 GN=Sd1_gp29 PE=4 SV=1
MM1 pKa = 7.18NAVDD5 pKa = 4.57KK6 pKa = 10.67RR7 pKa = 11.84TINGNNGTVRR17 pKa = 11.84TEE19 pKa = 4.42DD20 pKa = 2.73KK21 pKa = 10.39RR22 pKa = 11.84QRR24 pKa = 11.84KK25 pKa = 8.65RR26 pKa = 11.84PSGYY30 pKa = 10.06YY31 pKa = 8.95VLKK34 pKa = 10.9DD35 pKa = 3.51EE36 pKa = 4.52VRR38 pKa = 11.84AGLRR42 pKa = 11.84ARR44 pKa = 11.84LEE46 pKa = 4.0MVLDD50 pKa = 3.96FFGTKK55 pKa = 10.47ANIAKK60 pKa = 9.21QLKK63 pKa = 7.58VTPQAVEE70 pKa = 3.72EE71 pKa = 4.24WFKK74 pKa = 11.38RR75 pKa = 11.84GMISARR81 pKa = 11.84GAQLSHH87 pKa = 6.72NYY89 pKa = 9.66YY90 pKa = 10.0KK91 pKa = 10.9RR92 pKa = 11.84NGEE95 pKa = 3.9GFRR98 pKa = 11.84ATFCRR103 pKa = 11.84PDD105 pKa = 3.38LQFDD109 pKa = 4.36GNGKK113 pKa = 8.92PLTLRR118 pKa = 11.84CKK120 pKa = 9.49KK121 pKa = 9.98RR122 pKa = 11.84HH123 pKa = 4.86MLRR126 pKa = 11.84VVTEE130 pKa = 4.33AEE132 pKa = 4.14LATKK136 pKa = 9.16PEE138 pKa = 4.04CRR140 pKa = 11.84SWRR143 pKa = 11.84KK144 pKa = 9.29IKK146 pKa = 10.56EE147 pKa = 3.92EE148 pKa = 3.75NRR150 pKa = 11.84KK151 pKa = 9.53KK152 pKa = 10.77RR153 pKa = 11.84EE154 pKa = 3.89AEE156 pKa = 4.03KK157 pKa = 11.1NSTII161 pKa = 4.37

Molecular weight: 18.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

73

0

73

14441

37

1131

197.8

21.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.33 ± 0.496

1.24 ± 0.162

6.142 ± 0.296

6.495 ± 0.349

3.961 ± 0.214

8.102 ± 0.469

1.454 ± 0.19

6.343 ± 0.209

6.433 ± 0.381

7.098 ± 0.292

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.708 ± 0.28

5.027 ± 0.212

3.185 ± 0.247

3.829 ± 0.345

4.55 ± 0.277

6.98 ± 0.471

5.921 ± 0.329

7.022 ± 0.289

1.309 ± 0.106

3.871 ± 0.212
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski