Rodent associated circovirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus

Average proteome isoelectric point is 7.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4MWX5|A0A2H4MWX5_9CIRC ATP-dependent helicase Rep OS=Rodent associated circovirus 1 OX=2560708 PE=3 SV=1
MM1 pKa = 7.4AQAQILQQRR10 pKa = 11.84LVKK13 pKa = 10.48QGARR17 pKa = 11.84GRR19 pKa = 11.84WCFTINNYY27 pKa = 7.26TAEE30 pKa = 4.14EE31 pKa = 4.02EE32 pKa = 4.22QAVIALAGEE41 pKa = 4.34AKK43 pKa = 10.6YY44 pKa = 10.04LICGRR49 pKa = 11.84EE50 pKa = 3.93VGEE53 pKa = 4.53NGTPHH58 pKa = 6.46LQGFVNLKK66 pKa = 8.66KK67 pKa = 10.33KK68 pKa = 10.48KK69 pKa = 9.97RR70 pKa = 11.84FAAMKK75 pKa = 8.46EE76 pKa = 3.96ALGGRR81 pKa = 11.84CHH83 pKa = 7.71LEE85 pKa = 3.51PARR88 pKa = 11.84GDD90 pKa = 3.43DD91 pKa = 4.68CSNKK95 pKa = 10.16DD96 pKa = 3.56YY97 pKa = 10.78CSKK100 pKa = 11.16GGDD103 pKa = 3.21ILIEE107 pKa = 4.02EE108 pKa = 4.72GVPQRR113 pKa = 11.84EE114 pKa = 4.16RR115 pKa = 11.84QRR117 pKa = 11.84TDD119 pKa = 2.95LKK121 pKa = 10.64QACEE125 pKa = 4.05LVTQGGDD132 pKa = 2.95IRR134 pKa = 11.84HH135 pKa = 5.68VARR138 pKa = 11.84DD139 pKa = 3.61YY140 pKa = 11.1PEE142 pKa = 4.1VFVRR146 pKa = 11.84YY147 pKa = 9.36HH148 pKa = 6.75RR149 pKa = 11.84GLLALQLYY157 pKa = 10.01HH158 pKa = 7.78PDD160 pKa = 3.2LCLPRR165 pKa = 11.84QWKK168 pKa = 8.43TEE170 pKa = 3.65VFVYY174 pKa = 10.19VGPPGVGKK182 pKa = 10.62SRR184 pKa = 11.84IVQAKK189 pKa = 10.17APIGYY194 pKa = 7.81WKK196 pKa = 10.03PRR198 pKa = 11.84GKK200 pKa = 9.03WWDD203 pKa = 3.98GYY205 pKa = 10.81HH206 pKa = 6.46GNSDD210 pKa = 3.91VILDD214 pKa = 4.7DD215 pKa = 4.21FYY217 pKa = 11.95GWLPFDD223 pKa = 5.03DD224 pKa = 4.89LLRR227 pKa = 11.84MCDD230 pKa = 3.54RR231 pKa = 11.84YY232 pKa = 10.52PLTVEE237 pKa = 4.33TKK239 pKa = 10.58GGTTQFLAKK248 pKa = 10.19RR249 pKa = 11.84IFITSNKK256 pKa = 9.5SPSEE260 pKa = 4.11WYY262 pKa = 10.28SDD264 pKa = 3.6EE265 pKa = 3.98ITNKK269 pKa = 9.76DD270 pKa = 3.09ALYY273 pKa = 10.56RR274 pKa = 11.84RR275 pKa = 11.84LTEE278 pKa = 3.61LHH280 pKa = 6.29MWTGTCFEE288 pKa = 4.75HH289 pKa = 7.1PPPRR293 pKa = 11.84VMWNHH298 pKa = 7.32KK299 pKa = 9.92INYY302 pKa = 8.23

Molecular weight: 34.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4MWX5|A0A2H4MWX5_9CIRC ATP-dependent helicase Rep OS=Rodent associated circovirus 1 OX=2560708 PE=3 SV=1
MM1 pKa = 7.4AQAQILQQRR10 pKa = 11.84LVKK13 pKa = 10.48QGARR17 pKa = 11.84GRR19 pKa = 11.84WCFTINNYY27 pKa = 7.26TAEE30 pKa = 4.14EE31 pKa = 4.02EE32 pKa = 4.22QAVIALAGEE41 pKa = 4.34AKK43 pKa = 10.6YY44 pKa = 10.04LICGRR49 pKa = 11.84EE50 pKa = 3.93VGEE53 pKa = 4.53NGTPHH58 pKa = 6.46LQGFVNLKK66 pKa = 8.66KK67 pKa = 10.33KK68 pKa = 10.48KK69 pKa = 9.97RR70 pKa = 11.84FAAMKK75 pKa = 8.46EE76 pKa = 3.96ALGGRR81 pKa = 11.84CHH83 pKa = 7.71LEE85 pKa = 3.51PARR88 pKa = 11.84GDD90 pKa = 3.43DD91 pKa = 4.68CSNKK95 pKa = 10.16DD96 pKa = 3.56YY97 pKa = 10.78CSKK100 pKa = 11.16GGDD103 pKa = 3.21ILIEE107 pKa = 4.02EE108 pKa = 4.72GVPQRR113 pKa = 11.84EE114 pKa = 4.16RR115 pKa = 11.84QRR117 pKa = 11.84TDD119 pKa = 2.95LKK121 pKa = 10.64QACEE125 pKa = 4.05LVTQGGDD132 pKa = 2.95IRR134 pKa = 11.84HH135 pKa = 5.68VARR138 pKa = 11.84DD139 pKa = 3.61YY140 pKa = 11.1PEE142 pKa = 4.1VFVRR146 pKa = 11.84YY147 pKa = 9.36HH148 pKa = 6.75RR149 pKa = 11.84GLLALQLYY157 pKa = 10.01HH158 pKa = 7.78PDD160 pKa = 3.2LCLPRR165 pKa = 11.84QWKK168 pKa = 8.43TEE170 pKa = 3.65VFVYY174 pKa = 10.19VGPPGVGKK182 pKa = 10.62SRR184 pKa = 11.84IVQAKK189 pKa = 10.17APIGYY194 pKa = 7.81WKK196 pKa = 10.03PRR198 pKa = 11.84GKK200 pKa = 9.03WWDD203 pKa = 3.98GYY205 pKa = 10.81HH206 pKa = 6.46GNSDD210 pKa = 3.91VILDD214 pKa = 4.7DD215 pKa = 4.21FYY217 pKa = 11.95GWLPFDD223 pKa = 5.03DD224 pKa = 4.89LLRR227 pKa = 11.84MCDD230 pKa = 3.54RR231 pKa = 11.84YY232 pKa = 10.52PLTVEE237 pKa = 4.33TKK239 pKa = 10.58GGTTQFLAKK248 pKa = 10.19RR249 pKa = 11.84IFITSNKK256 pKa = 9.5SPSEE260 pKa = 4.11WYY262 pKa = 10.28SDD264 pKa = 3.6EE265 pKa = 3.98ITNKK269 pKa = 9.76DD270 pKa = 3.09ALYY273 pKa = 10.56RR274 pKa = 11.84RR275 pKa = 11.84LTEE278 pKa = 3.61LHH280 pKa = 6.29MWTGTCFEE288 pKa = 4.75HH289 pKa = 7.1PPPRR293 pKa = 11.84VMWNHH298 pKa = 7.32KK299 pKa = 9.92INYY302 pKa = 8.23

Molecular weight: 34.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

302

302

302

302.0

34.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.291 ± 0.0

2.98 ± 0.0

5.629 ± 0.0

6.291 ± 0.0

3.311 ± 0.0

8.94 ± 0.0

2.98 ± 0.0

4.636 ± 0.0

6.623 ± 0.0

8.609 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.656 ± 0.0

3.311 ± 0.0

5.298 ± 0.0

4.967 ± 0.0

7.616 ± 0.0

2.649 ± 0.0

4.967 ± 0.0

5.629 ± 0.0

2.98 ± 0.0

4.636 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski