Vibrio genomosp. F10

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3193 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B9R1J0|A0A1B9R1J0_9VIBR Uncharacterized protein OS=Vibrio genomosp. F10 OX=723171 GN=A6E14_06865 PE=4 SV=1
MM1 pKa = 7.35FNIKK5 pKa = 9.63SLPMAICLGLAALSGSAASASAMAGEE31 pKa = 4.58MVNPDD36 pKa = 3.05GNVVVGYY43 pKa = 6.91WHH45 pKa = 6.68NWCDD49 pKa = 3.29GAGYY53 pKa = 10.39KK54 pKa = 10.38GGNSPCMSLDD64 pKa = 5.11DD65 pKa = 4.69INPMYY70 pKa = 10.82NVVDD74 pKa = 3.7ISFMKK79 pKa = 10.7VYY81 pKa = 9.18DD82 pKa = 3.84TAEE85 pKa = 3.76GRR87 pKa = 11.84IPTFKK92 pKa = 10.76LDD94 pKa = 3.54PTVGLSEE101 pKa = 4.36QEE103 pKa = 4.48FINQIEE109 pKa = 4.22QLNQQGRR116 pKa = 11.84SVLLALGGADD126 pKa = 3.84AHH128 pKa = 7.43VEE130 pKa = 4.0LQKK133 pKa = 11.17GDD135 pKa = 3.51EE136 pKa = 3.97QAFAEE141 pKa = 4.64EE142 pKa = 4.77IIRR145 pKa = 11.84LTEE148 pKa = 3.62QYY150 pKa = 11.18GFDD153 pKa = 3.96GLDD156 pKa = 3.07IDD158 pKa = 5.36LEE160 pKa = 4.37QAAVTAADD168 pKa = 3.71NQIVIPAALKK178 pKa = 10.05IVKK181 pKa = 9.44DD182 pKa = 3.73HH183 pKa = 6.42YY184 pKa = 11.11AAEE187 pKa = 4.54GKK189 pKa = 10.17NFLITMAPEE198 pKa = 4.36FPYY201 pKa = 9.54LTQGGKK207 pKa = 9.32YY208 pKa = 9.76VPYY211 pKa = 9.86IDD213 pKa = 5.19NLAGYY218 pKa = 8.89YY219 pKa = 10.41DD220 pKa = 4.32WINPQFYY227 pKa = 10.24NQGGDD232 pKa = 4.12GIWVDD237 pKa = 3.71SVGWIAQNNDD247 pKa = 2.84ALKK250 pKa = 10.7QEE252 pKa = 4.84FIYY255 pKa = 10.92YY256 pKa = 9.95IADD259 pKa = 3.49SLSNGTRR266 pKa = 11.84GFHH269 pKa = 6.38QIPHH273 pKa = 6.11NKK275 pKa = 9.59LVFGIPANNDD285 pKa = 2.95AAATGYY291 pKa = 8.94VQNPQDD297 pKa = 4.1LYY299 pKa = 11.63DD300 pKa = 4.74AFEE303 pKa = 4.0QLNQQGQPLRR313 pKa = 11.84GVMTWSVNWDD323 pKa = 3.25MGTDD327 pKa = 3.34AGGRR331 pKa = 11.84AYY333 pKa = 10.74NEE335 pKa = 3.68QFIRR339 pKa = 11.84DD340 pKa = 4.1YY341 pKa = 11.24GPYY344 pKa = 9.56IHH346 pKa = 6.94GQTPPPITSNEE357 pKa = 3.94PVLKK361 pKa = 10.82GIDD364 pKa = 3.73DD365 pKa = 3.83ARR367 pKa = 11.84VAHH370 pKa = 6.1QSYY373 pKa = 9.42FDD375 pKa = 3.82PMSDD379 pKa = 3.07VTAMDD384 pKa = 5.38DD385 pKa = 3.49EE386 pKa = 7.32DD387 pKa = 6.6GDD389 pKa = 4.2LTHH392 pKa = 7.33HH393 pKa = 6.2ITVEE397 pKa = 4.26GQVNTSSVGTYY408 pKa = 10.5ALTYY412 pKa = 10.36LVEE415 pKa = 5.81DD416 pKa = 3.53SDD418 pKa = 4.75GNQTSKK424 pKa = 10.44VRR426 pKa = 11.84SVDD429 pKa = 3.62VYY431 pKa = 10.51SSKK434 pKa = 10.92PIFKK438 pKa = 10.23GVSDD442 pKa = 3.55TSIQFGSEE450 pKa = 3.73FDD452 pKa = 3.67SLAGVSASDD461 pKa = 4.53EE462 pKa = 4.18EE463 pKa = 6.15DD464 pKa = 3.49GDD466 pKa = 3.8LTSRR470 pKa = 11.84IEE472 pKa = 3.79IYY474 pKa = 11.17GDD476 pKa = 3.44VEE478 pKa = 4.38TNRR481 pKa = 11.84LGSQTLLYY489 pKa = 10.77SVTDD493 pKa = 3.59SANQSTTVEE502 pKa = 4.15RR503 pKa = 11.84TIHH506 pKa = 5.97VVDD509 pKa = 5.05EE510 pKa = 4.68SSCAAPWQTNNVYY523 pKa = 10.58EE524 pKa = 4.56GGDD527 pKa = 3.31RR528 pKa = 11.84VLHH531 pKa = 6.85DD532 pKa = 3.39GTVYY536 pKa = 10.03EE537 pKa = 4.29AAWWTRR543 pKa = 11.84GEE545 pKa = 4.29QPGSTGQWGVWRR557 pKa = 11.84EE558 pKa = 4.05VTDD561 pKa = 3.7TGCDD565 pKa = 3.32GTNNGDD571 pKa = 3.73NGAGDD576 pKa = 4.54DD577 pKa = 5.13NNNGDD582 pKa = 4.29NNNSGDD588 pKa = 3.86TDD590 pKa = 3.69NGSDD594 pKa = 3.36TGNEE598 pKa = 4.01NGDD601 pKa = 3.97SNGGNGNTDD610 pKa = 3.82NVTEE614 pKa = 5.07WIPGQTQASNGDD626 pKa = 3.52MVSYY630 pKa = 10.5QGSCFVAKK638 pKa = 10.4NNPGVWEE645 pKa = 4.61TPTQSATWFWDD656 pKa = 3.75EE657 pKa = 4.36VSCPP661 pKa = 3.51

Molecular weight: 71.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B9R0H4|A0A1B9R0H4_9VIBR PBPb domain-containing protein OS=Vibrio genomosp. F10 OX=723171 GN=A6E14_01210 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84ATINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSKK44 pKa = 10.84

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3193

0

3193

1029883

35

1908

322.5

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.446 ± 0.043

0.994 ± 0.013

5.572 ± 0.038

6.376 ± 0.041

4.086 ± 0.03

6.871 ± 0.043

2.283 ± 0.022

6.514 ± 0.034

5.236 ± 0.034

10.357 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.705 ± 0.021

4.196 ± 0.03

3.855 ± 0.027

4.508 ± 0.031

4.478 ± 0.033

6.871 ± 0.039

5.422 ± 0.031

7.129 ± 0.038

1.221 ± 0.016

2.881 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski