[Candida] inconspicua

Taxonomy:

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5046 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4T0WXM9|A0A4T0WXM9_9ASCO t-SNARE coiled-coil homology domain-containing protein OS=[Candida] inconspicua OX=52247 GN=CANINC_003736 PE=4 SV=1
MM1 pKa = 6.62STKK4 pKa = 10.46SFTAEE9 pKa = 3.3QVAEE13 pKa = 4.26HH14 pKa = 5.91NTRR17 pKa = 11.84DD18 pKa = 4.55DD19 pKa = 2.38IWIIYY24 pKa = 8.34NGKK27 pKa = 10.13VYY29 pKa = 10.82DD30 pKa = 3.59VTQYY34 pKa = 11.52LDD36 pKa = 3.36EE37 pKa = 5.15HH38 pKa = 6.75PGGEE42 pKa = 4.59EE43 pKa = 4.84VILDD47 pKa = 4.08CAGDD51 pKa = 3.86DD52 pKa = 3.57ATEE55 pKa = 4.08AFDD58 pKa = 6.49DD59 pKa = 4.1IGHH62 pKa = 6.11SEE64 pKa = 4.25DD65 pKa = 3.28AHH67 pKa = 5.87EE68 pKa = 4.15QLEE71 pKa = 4.28SLLIGEE77 pKa = 5.48LIGGVKK83 pKa = 9.73PKK85 pKa = 10.36SASSDD90 pKa = 3.4SSSGSGSDD98 pKa = 3.76PNLALYY104 pKa = 10.28AVIIAIIAAAAYY116 pKa = 8.84FYY118 pKa = 11.12LNQSS122 pKa = 3.19

Molecular weight: 13.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4T0X312|A0A4T0X312_9ASCO Uncharacterized protein OS=[Candida] inconspicua OX=52247 GN=CANINC_002212 PE=4 SV=1
MM1 pKa = 7.41IALIRR6 pKa = 11.84STLATVRR13 pKa = 11.84NNTVPSVLLSAPGMMTVSGLFVQQRR38 pKa = 11.84FGTRR42 pKa = 11.84GGNRR46 pKa = 11.84GNTYY50 pKa = 10.33QPNTLKK56 pKa = 10.67RR57 pKa = 11.84KK58 pKa = 9.26RR59 pKa = 11.84RR60 pKa = 11.84LGFLARR66 pKa = 11.84MKK68 pKa = 10.39SISGRR73 pKa = 11.84QIVKK77 pKa = 10.05RR78 pKa = 11.84RR79 pKa = 11.84FEE81 pKa = 3.82KK82 pKa = 10.88GRR84 pKa = 11.84WFLTHH89 pKa = 7.07

Molecular weight: 10.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5046

0

5046

2593241

14

5283

513.9

58.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.234 ± 0.031

1.215 ± 0.013

6.201 ± 0.024

6.833 ± 0.033

4.489 ± 0.023

4.826 ± 0.035

2.053 ± 0.01

7.045 ± 0.029

7.485 ± 0.036

9.5 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.026 ± 0.011

6.309 ± 0.032

4.131 ± 0.025

3.779 ± 0.036

4.071 ± 0.021

8.643 ± 0.04

5.932 ± 0.036

5.793 ± 0.029

0.967 ± 0.01

3.461 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski