Vernonia yellow vein betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 9.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C9XIB2|C9XIB2_9VIRU C1 protein OS=Vernonia yellow vein betasatellite OX=666635 GN=C1 PE=4 SV=1
MM1 pKa = 7.43TPLNTMRR8 pKa = 11.84NNSRR12 pKa = 11.84KK13 pKa = 6.78THH15 pKa = 6.42PKK17 pKa = 9.48TMTIKK22 pKa = 9.18HH23 pKa = 5.14TTNKK27 pKa = 10.01GIKK30 pKa = 8.57FTIDD34 pKa = 2.83AKK36 pKa = 11.11LNEE39 pKa = 4.38CFKK42 pKa = 10.82IIVQVTRR49 pKa = 11.84TNRR52 pKa = 11.84NIITKK57 pKa = 8.45HH58 pKa = 5.36TYY60 pKa = 7.75TMYY63 pKa = 10.54YY64 pKa = 9.54GYY66 pKa = 10.93GAILVPFDD74 pKa = 4.09FNGLEE79 pKa = 4.0TQIRR83 pKa = 11.84NTIEE87 pKa = 4.31VMFHH91 pKa = 7.32DD92 pKa = 4.32IDD94 pKa = 3.73HH95 pKa = 7.03FKK97 pKa = 10.74PEE99 pKa = 4.39DD100 pKa = 3.47MIGGNRR106 pKa = 11.84CNHH109 pKa = 3.48VRR111 pKa = 11.84EE112 pKa = 4.25YY113 pKa = 10.31RR114 pKa = 11.84FHH116 pKa = 7.68RR117 pKa = 11.84ITCTRR122 pKa = 11.84TIQLL126 pKa = 3.67

Molecular weight: 14.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C9XIB2|C9XIB2_9VIRU C1 protein OS=Vernonia yellow vein betasatellite OX=666635 GN=C1 PE=4 SV=1
MM1 pKa = 7.43TPLNTMRR8 pKa = 11.84NNSRR12 pKa = 11.84KK13 pKa = 6.78THH15 pKa = 6.42PKK17 pKa = 9.48TMTIKK22 pKa = 9.18HH23 pKa = 5.14TTNKK27 pKa = 10.01GIKK30 pKa = 8.57FTIDD34 pKa = 2.83AKK36 pKa = 11.11LNEE39 pKa = 4.38CFKK42 pKa = 10.82IIVQVTRR49 pKa = 11.84TNRR52 pKa = 11.84NIITKK57 pKa = 8.45HH58 pKa = 5.36TYY60 pKa = 7.75TMYY63 pKa = 10.54YY64 pKa = 9.54GYY66 pKa = 10.93GAILVPFDD74 pKa = 4.09FNGLEE79 pKa = 4.0TQIRR83 pKa = 11.84NTIEE87 pKa = 4.31VMFHH91 pKa = 7.32DD92 pKa = 4.32IDD94 pKa = 3.73HH95 pKa = 7.03FKK97 pKa = 10.74PEE99 pKa = 4.39DD100 pKa = 3.47MIGGNRR106 pKa = 11.84CNHH109 pKa = 3.48VRR111 pKa = 11.84EE112 pKa = 4.25YY113 pKa = 10.31RR114 pKa = 11.84FHH116 pKa = 7.68RR117 pKa = 11.84ITCTRR122 pKa = 11.84TIQLL126 pKa = 3.67

Molecular weight: 14.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

126

126

126

126.0

14.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

1.587 ± 0.0

2.381 ± 0.0

3.968 ± 0.0

3.968 ± 0.0

5.556 ± 0.0

4.762 ± 0.0

5.556 ± 0.0

11.111 ± 0.0

7.143 ± 0.0

3.968 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.762 ± 0.0

8.73 ± 0.0

3.175 ± 0.0

2.381 ± 0.0

7.937 ± 0.0

0.794 ± 0.0

14.286 ± 0.0

3.968 ± 0.0

0.0 ± 0.0

3.968 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski