Flavisolibacter tropicus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavisolibacter

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4588 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A172U0A7|A0A172U0A7_9BACT CBAH domain-containing protein OS=Flavisolibacter tropicus OX=1492898 GN=SY85_22210 PE=3 SV=1
MM1 pKa = 7.77KK2 pKa = 10.32FGNWKK7 pKa = 8.11VTQDD11 pKa = 3.63GIVWKK16 pKa = 10.63GPGYY20 pKa = 10.8NEE22 pKa = 3.7FVIPATEE29 pKa = 4.15LVAEE33 pKa = 4.34RR34 pKa = 11.84PGLLSTPTTYY44 pKa = 10.46EE45 pKa = 3.52WIMRR49 pKa = 11.84ATDD52 pKa = 3.65EE53 pKa = 4.16HH54 pKa = 6.9WLTEE58 pKa = 4.29DD59 pKa = 4.96DD60 pKa = 6.24LYY62 pKa = 11.6DD63 pKa = 3.73LNYY66 pKa = 11.0AFVFAAARR74 pKa = 11.84YY75 pKa = 8.2GLNFNYY81 pKa = 8.04EE82 pKa = 4.26TFDD85 pKa = 3.45NTLEE89 pKa = 4.07EE90 pKa = 4.09QYY92 pKa = 11.38EE93 pKa = 4.2RR94 pKa = 11.84FDD96 pKa = 5.85DD97 pKa = 5.4EE98 pKa = 6.48DD99 pKa = 6.26DD100 pKa = 4.83EE101 pKa = 7.82DD102 pKa = 6.44DD103 pKa = 5.39DD104 pKa = 6.89DD105 pKa = 4.35YY106 pKa = 12.28

Molecular weight: 12.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A172TZG0|A0A172TZG0_9BACT Thioredoxin OS=Flavisolibacter tropicus OX=1492898 GN=SY85_20330 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.56RR3 pKa = 11.84TFQPHH8 pKa = 4.58RR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 6.91TVHH16 pKa = 6.14GFRR19 pKa = 11.84KK20 pKa = 10.11RR21 pKa = 11.84MQTANGRR28 pKa = 11.84KK29 pKa = 8.71VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.16GRR39 pKa = 11.84HH40 pKa = 5.59KK41 pKa = 10.51LTVSDD46 pKa = 4.17EE47 pKa = 4.26KK48 pKa = 10.99RR49 pKa = 11.84LKK51 pKa = 10.55

Molecular weight: 6.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4588

0

4588

1527984

38

3798

333.0

37.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.545 ± 0.043

0.847 ± 0.015

5.029 ± 0.026

5.687 ± 0.047

4.831 ± 0.027

6.781 ± 0.035

1.935 ± 0.02

6.802 ± 0.03

6.723 ± 0.041

9.517 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.242 ± 0.016

5.437 ± 0.035

3.88 ± 0.022

4.23 ± 0.024

4.084 ± 0.026

6.344 ± 0.033

6.127 ± 0.057

6.543 ± 0.03

1.3 ± 0.015

4.117 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski