Penicillium aurantiogriseum bipartite virus 1

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2KPE1|A0A0S2KPE1_9VIRU 20 kDa protein OS=Penicillium aurantiogriseum bipartite virus 1 OX=1755754 PE=4 SV=1
MM1 pKa = 7.49VGVGSDD7 pKa = 3.01TDD9 pKa = 4.04GNDD12 pKa = 2.95EE13 pKa = 4.34HH14 pKa = 9.29SYY16 pKa = 8.8EE17 pKa = 4.05QWRR20 pKa = 11.84TTPLDD25 pKa = 3.58VIIARR30 pKa = 11.84DD31 pKa = 3.42WVVEE35 pKa = 3.88LEE37 pKa = 4.09QGPMEE42 pKa = 4.81LMAEE46 pKa = 4.38LGLRR50 pKa = 11.84SPSYY54 pKa = 10.66PDD56 pKa = 4.19LEE58 pKa = 4.7HH59 pKa = 6.55HH60 pKa = 6.5ATWISDD66 pKa = 3.59DD67 pKa = 4.63DD68 pKa = 5.29GDD70 pKa = 3.92VTRR73 pKa = 11.84TGVPYY78 pKa = 10.49RR79 pKa = 11.84GEE81 pKa = 3.78NLFAQWVLEE90 pKa = 4.03TLLGEE95 pKa = 4.18SRR97 pKa = 11.84MDD99 pKa = 3.37VEE101 pKa = 4.51LTAEE105 pKa = 4.31VAAEE109 pKa = 4.01MGVMAVAGYY118 pKa = 9.7SAAVWLQGEE127 pKa = 4.58VIDD130 pKa = 5.46LRR132 pKa = 11.84VLRR135 pKa = 11.84VASTPLAQAYY145 pKa = 7.8HH146 pKa = 6.63ALVAGKK152 pKa = 10.0SAVDD156 pKa = 3.59EE157 pKa = 4.19KK158 pKa = 11.37HH159 pKa = 6.66FMGGSANN166 pKa = 3.49

Molecular weight: 18.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2KPE1|A0A0S2KPE1_9VIRU 20 kDa protein OS=Penicillium aurantiogriseum bipartite virus 1 OX=1755754 PE=4 SV=1
MM1 pKa = 7.92ADD3 pKa = 3.1MTAPPSFLDD12 pKa = 3.4KK13 pKa = 11.12FGGSTANVDD22 pKa = 3.74YY23 pKa = 10.96TDD25 pKa = 5.13DD26 pKa = 3.92PSKK29 pKa = 10.92QGGILPIPLQGDD41 pKa = 3.68SLATLEE47 pKa = 4.31TKK49 pKa = 9.22MRR51 pKa = 11.84NLARR55 pKa = 11.84VVEE58 pKa = 4.99RR59 pKa = 11.84GASVARR65 pKa = 11.84FTGMMGTPQQSRR77 pKa = 11.84DD78 pKa = 3.41ALQTAKK84 pKa = 10.02MRR86 pKa = 11.84MTEE89 pKa = 3.93VEE91 pKa = 4.4KK92 pKa = 11.03EE93 pKa = 4.21MFSHH97 pKa = 6.56WEE99 pKa = 3.68AGGRR103 pKa = 11.84LPDD106 pKa = 4.03VNWGTDD112 pKa = 3.18VDD114 pKa = 4.18AMPSGSEE121 pKa = 3.84PRR123 pKa = 11.84RR124 pKa = 11.84KK125 pKa = 10.23AEE127 pKa = 3.9IQAEE131 pKa = 4.11ALNRR135 pKa = 11.84LYY137 pKa = 9.97KK138 pKa = 10.14TDD140 pKa = 3.49AATAGHH146 pKa = 5.35VVHH149 pKa = 7.02WKK151 pKa = 7.86KK152 pKa = 8.86TFRR155 pKa = 11.84AIIPLLVSMTKK166 pKa = 10.1VVGSEE171 pKa = 3.7RR172 pKa = 11.84DD173 pKa = 3.4FLGGQDD179 pKa = 3.52VLDD182 pKa = 4.5ANEE185 pKa = 3.93MAEE188 pKa = 4.02VQTIGKK194 pKa = 9.73VNGTTYY200 pKa = 11.44ASINAIQEE208 pKa = 4.06EE209 pKa = 4.64VHH211 pKa = 6.65RR212 pKa = 11.84LLSSINRR219 pKa = 11.84SKK221 pKa = 11.43DD222 pKa = 3.17LLQARR227 pKa = 11.84EE228 pKa = 4.02HH229 pKa = 6.31ALKK232 pKa = 10.75AKK234 pKa = 9.53NPKK237 pKa = 10.08YY238 pKa = 10.12KK239 pKa = 10.52VKK241 pKa = 10.63QSPANDD247 pKa = 2.9ARR249 pKa = 11.84QLLGKK254 pKa = 9.82RR255 pKa = 11.84RR256 pKa = 11.84LGADD260 pKa = 3.03VDD262 pKa = 5.14FSADD266 pKa = 3.91PIPEE270 pKa = 3.6RR271 pKa = 11.84RR272 pKa = 11.84VRR274 pKa = 11.84RR275 pKa = 11.84NLALGVHH282 pKa = 5.39QEE284 pKa = 4.26SVPIASRR291 pKa = 11.84AGEE294 pKa = 3.83QRR296 pKa = 11.84APTRR300 pKa = 11.84GGINQRR306 pKa = 11.84RR307 pKa = 11.84PHH309 pKa = 7.31PDD311 pKa = 3.13TDD313 pKa = 3.77PSADD317 pKa = 3.54MDD319 pKa = 4.02TQII322 pKa = 5.11

Molecular weight: 35.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1102

166

614

367.3

41.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.53 ± 1.296

0.454 ± 0.276

7.26 ± 0.149

7.169 ± 0.686

3.085 ± 0.78

6.897 ± 0.735

2.269 ± 0.197

4.446 ± 0.666

4.537 ± 0.869

8.53 ± 0.453

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.722 ± 0.72

2.904 ± 0.372

5.626 ± 0.531

4.628 ± 0.42

7.078 ± 0.669

5.626 ± 0.319

5.898 ± 0.15

7.169 ± 0.96

1.996 ± 0.442

3.176 ± 0.869
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski