Paulinella micropora

Taxonomy: cellular organisms; Eukaryota; Sar; Rhizaria; Imbricatea; Silicofilosea; Euglyphida; Paulinellidae; Paulinella

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 897 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L5YCZ3|A0A1L5YCZ3_9EUKA Glutaredoxin OS=Paulinella micropora OX=1928728 GN=MYN1_Chr_733 PE=3 SV=1
MM1 pKa = 7.31LHH3 pKa = 7.07LSNLLLAAVMWVQVPQWSADD23 pKa = 3.13WSKK26 pKa = 11.17CAVDD30 pKa = 5.23LPDD33 pKa = 5.15VNCHH37 pKa = 5.69WYY39 pKa = 10.4VVAPDD44 pKa = 3.48NTFGEE49 pKa = 4.69GFDD52 pKa = 3.64WATSPWFDD60 pKa = 4.62ANGLQDD66 pKa = 3.6ISALHH71 pKa = 5.5EE72 pKa = 4.34TLTNLQNSS80 pKa = 3.94

Molecular weight: 9.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L5YCQ6|A0A1L5YCQ6_9EUKA 30S ribosomal protein S4 OS=Paulinella micropora OX=1928728 GN=rps4 PE=3 SV=1
MM1 pKa = 7.55TKK3 pKa = 9.01RR4 pKa = 11.84TLGGTSRR11 pKa = 11.84KK12 pKa = 9.07RR13 pKa = 11.84KK14 pKa = 8.17RR15 pKa = 11.84VSGFRR20 pKa = 11.84VRR22 pKa = 11.84MRR24 pKa = 11.84SITGRR29 pKa = 11.84RR30 pKa = 11.84VIRR33 pKa = 11.84TRR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.74RR38 pKa = 11.84GRR40 pKa = 11.84ARR42 pKa = 11.84LSVV45 pKa = 3.2

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

897

0

897

272856

26

1535

304.2

33.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.371 ± 0.075

1.3 ± 0.026

4.719 ± 0.055

5.79 ± 0.071

3.967 ± 0.109

7.114 ± 0.07

2.086 ± 0.042

7.561 ± 0.068

4.556 ± 0.067

11.853 ± 0.1

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.06 ± 0.032

4.304 ± 0.047

4.461 ± 0.047

4.14 ± 0.048

5.885 ± 0.054

7.084 ± 0.065

5.315 ± 0.051

6.336 ± 0.061

1.418 ± 0.037

2.682 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski