Paracoccus homiensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3828 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9ZXL6|A0A1H9ZXL6_9RHOB Nucleoside-binding protein OS=Paracoccus homiensis OX=364199 GN=SAMN04489858_10230 PE=4 SV=1
MM1 pKa = 7.33ATLFGNSGNNTIPGTSGADD20 pKa = 3.78LIYY23 pKa = 10.85GFGGNDD29 pKa = 3.16SLGGNGGRR37 pKa = 11.84DD38 pKa = 4.01TIWGGSGNDD47 pKa = 3.84TIRR50 pKa = 11.84SSGAGVYY57 pKa = 10.51DD58 pKa = 3.98GGTGNDD64 pKa = 3.3YY65 pKa = 11.21VYY67 pKa = 11.06AGLGTQEE74 pKa = 4.28TLRR77 pKa = 11.84GGAGTDD83 pKa = 3.35WLNTTHH89 pKa = 7.24WNGNYY94 pKa = 8.96TIYY97 pKa = 8.03MTTGATNHH105 pKa = 6.17TGEE108 pKa = 5.1SFTQFEE114 pKa = 4.46NLVTGNGNDD123 pKa = 3.96NITGTSGANRR133 pKa = 11.84IYY135 pKa = 10.37TYY137 pKa = 10.99GGNDD141 pKa = 3.13RR142 pKa = 11.84VNAGAGNDD150 pKa = 3.95YY151 pKa = 11.08VWTGDD156 pKa = 3.66GNDD159 pKa = 4.49SIDD162 pKa = 3.6AGSGRR167 pKa = 11.84DD168 pKa = 3.33TVYY171 pKa = 11.04GGNGNDD177 pKa = 4.23TIRR180 pKa = 11.84SSGSGIFDD188 pKa = 3.41GQGGNDD194 pKa = 3.86YY195 pKa = 10.43IYY197 pKa = 11.02AGLGTQEE204 pKa = 4.28TLRR207 pKa = 11.84GGAGTDD213 pKa = 3.35WLNTTHH219 pKa = 7.03WNSDD223 pKa = 3.17YY224 pKa = 10.31TINMVTGATNYY235 pKa = 9.07TGEE238 pKa = 4.48SFTQFEE244 pKa = 4.46NLVTGNGDD252 pKa = 3.6DD253 pKa = 4.72NIIGTADD260 pKa = 3.4GNRR263 pKa = 11.84IYY265 pKa = 11.06TNGGNDD271 pKa = 3.5KK272 pKa = 10.64VDD274 pKa = 3.46AGAGNDD280 pKa = 3.98YY281 pKa = 11.15VWTANGNDD289 pKa = 4.17SIDD292 pKa = 3.63AGSGRR297 pKa = 11.84DD298 pKa = 3.33TVYY301 pKa = 11.04GGNGNDD307 pKa = 4.23TIRR310 pKa = 11.84SSGSGIFDD318 pKa = 3.41GQGDD322 pKa = 4.01NDD324 pKa = 3.74YY325 pKa = 11.39VYY327 pKa = 10.98AGLGAQEE334 pKa = 4.28TLRR337 pKa = 11.84GGAGTDD343 pKa = 3.35WLNTTHH349 pKa = 7.24WNGNYY354 pKa = 8.55TINMTTGATNYY365 pKa = 8.91TGEE368 pKa = 4.48SFTQFEE374 pKa = 4.46NLVTGNGNDD383 pKa = 3.96NITGTSGANRR393 pKa = 11.84IYY395 pKa = 10.7TRR397 pKa = 11.84GGNDD401 pKa = 2.85TVAAGAGNDD410 pKa = 3.95YY411 pKa = 11.18VSGGAGNDD419 pKa = 3.66SLDD422 pKa = 4.05GGSGTNTVYY431 pKa = 10.73GGSGDD436 pKa = 3.86DD437 pKa = 4.04VIRR440 pKa = 11.84SSGRR444 pKa = 11.84GVYY447 pKa = 10.13DD448 pKa = 3.67GQDD451 pKa = 3.66GNDD454 pKa = 4.41LIYY457 pKa = 10.86AGNGTPEE464 pKa = 4.19TLRR467 pKa = 11.84GGSGIDD473 pKa = 3.46TLNTTSFGGDD483 pKa = 3.48YY484 pKa = 10.48NIDD487 pKa = 3.55MATGTTNFSGEE498 pKa = 4.15SFTQFEE504 pKa = 4.47HH505 pKa = 7.03LIAGAGDD512 pKa = 3.48DD513 pKa = 3.88TLAGNSASNRR523 pKa = 11.84ISGGDD528 pKa = 3.35GNDD531 pKa = 3.93RR532 pKa = 11.84ITGLDD537 pKa = 3.78GNDD540 pKa = 3.33TLYY543 pKa = 11.43GDD545 pKa = 4.3NGNDD549 pKa = 3.46YY550 pKa = 11.28LSGGNGNDD558 pKa = 3.95LLFGGNGNDD567 pKa = 3.34TMLGGSGNDD576 pKa = 2.62RR577 pKa = 11.84MYY579 pKa = 11.4GNNGVDD585 pKa = 3.14RR586 pKa = 11.84MFGGSGNDD594 pKa = 3.38YY595 pKa = 10.44MRR597 pKa = 11.84GGNDD601 pKa = 3.02NDD603 pKa = 3.71RR604 pKa = 11.84LYY606 pKa = 11.01GQNGRR611 pKa = 11.84DD612 pKa = 3.53NMYY615 pKa = 11.16GDD617 pKa = 4.62AGNDD621 pKa = 3.05TMYY624 pKa = 11.05GGNQNDD630 pKa = 3.71RR631 pKa = 11.84MDD633 pKa = 4.24GGSGNDD639 pKa = 3.27TMFGQSGDD647 pKa = 3.56DD648 pKa = 3.69RR649 pKa = 11.84ISGRR653 pKa = 11.84LGADD657 pKa = 3.28VMSGGGGEE665 pKa = 4.23DD666 pKa = 3.1TFVFYY671 pKa = 10.41STADD675 pKa = 3.52SPFGNSANYY684 pKa = 10.28DD685 pKa = 4.04RR686 pKa = 11.84ITDD689 pKa = 3.88FQGAGINLLSTIEE702 pKa = 4.19DD703 pKa = 4.31KK704 pKa = 10.93IDD706 pKa = 3.98LSAIDD711 pKa = 4.73ANTGIAGNQAFTFSGTSNGGAGSIWMQNVGSEE743 pKa = 3.52TWLRR747 pKa = 11.84VNTDD751 pKa = 3.06ADD753 pKa = 3.94STPEE757 pKa = 3.6MTIRR761 pKa = 11.84ISDD764 pKa = 3.85GADD767 pKa = 3.09DD768 pKa = 5.98ANDD771 pKa = 3.13YY772 pKa = 8.84WAGDD776 pKa = 4.15FILL779 pKa = 5.43

Molecular weight: 80.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9Y8F2|A0A1H9Y8F2_9RHOB Protein RodZ contains Xre-like HTH and DUF4115 domains OS=Paracoccus homiensis OX=364199 GN=SAMN04489858_10158 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.12GGRR28 pKa = 11.84RR29 pKa = 11.84VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.0GRR39 pKa = 11.84KK40 pKa = 8.91SLSAA44 pKa = 3.86

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3828

0

3828

1177105

27

4492

307.5

33.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.61 ± 0.058

0.867 ± 0.013

6.428 ± 0.041

5.237 ± 0.043

3.548 ± 0.029

8.939 ± 0.083

2.069 ± 0.023

5.288 ± 0.03

2.734 ± 0.033

10.078 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.852 ± 0.023

2.466 ± 0.024

5.222 ± 0.03

3.654 ± 0.026

7.184 ± 0.047

5.027 ± 0.034

5.265 ± 0.026

7.0 ± 0.035

1.459 ± 0.019

2.074 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski