Lynx canadensis faeces associated genomovirus CL1 48

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus lynca1

Average proteome isoelectric point is 7.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CJ90|A0A2Z5CJ90_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 48 OX=2219125 PE=3 SV=1
MM1 pKa = 7.88PSFIANFRR9 pKa = 11.84YY10 pKa = 10.32ALVTYY15 pKa = 7.13PQCGDD20 pKa = 3.69LDD22 pKa = 3.61PWSVMEE28 pKa = 4.79HH29 pKa = 6.35FSSLGAEE36 pKa = 4.26CIIGRR41 pKa = 11.84EE42 pKa = 4.04HH43 pKa = 6.36HH44 pKa = 6.38QDD46 pKa = 3.4GGSHH50 pKa = 5.84LHH52 pKa = 5.75VFVDD56 pKa = 4.53FGRR59 pKa = 11.84KK60 pKa = 7.86FRR62 pKa = 11.84SRR64 pKa = 11.84ATDD67 pKa = 3.21VFDD70 pKa = 4.92VDD72 pKa = 3.6GHH74 pKa = 6.46HH75 pKa = 7.29PNIEE79 pKa = 4.06PSKK82 pKa = 8.78GTPEE86 pKa = 4.01KK87 pKa = 11.01GFDD90 pKa = 3.46YY91 pKa = 10.65AIKK94 pKa = 10.71DD95 pKa = 3.34GDD97 pKa = 4.38VICGGLGRR105 pKa = 11.84PEE107 pKa = 4.21PSRR110 pKa = 11.84GSHH113 pKa = 6.06SGMSAKK119 pKa = 9.3WARR122 pKa = 11.84ITGAADD128 pKa = 3.22KK129 pKa = 11.36QEE131 pKa = 4.22FWDD134 pKa = 4.69LVHH137 pKa = 6.98EE138 pKa = 5.1LDD140 pKa = 4.6PKK142 pKa = 10.76SAACSFTSLSKK153 pKa = 10.06YY154 pKa = 10.56ADD156 pKa = 2.96WKK158 pKa = 10.74FAVDD162 pKa = 3.64PPGYY166 pKa = 9.12EE167 pKa = 3.89HH168 pKa = 7.63PGGFNFSDD176 pKa = 3.99GSFDD180 pKa = 4.13GRR182 pKa = 11.84SEE184 pKa = 4.2CKK186 pKa = 10.23SLVMYY191 pKa = 10.37GPSRR195 pKa = 11.84TGKK198 pKa = 8.21TMWARR203 pKa = 11.84SLGAHH208 pKa = 7.19LYY210 pKa = 10.52CVGLLSGDD218 pKa = 3.43EE219 pKa = 4.17CMKK222 pKa = 10.97AEE224 pKa = 4.1YY225 pKa = 10.57ADD227 pKa = 3.67YY228 pKa = 11.27AVFDD232 pKa = 4.48DD233 pKa = 4.63LRR235 pKa = 11.84GGFKK239 pKa = 10.44FFPAFKK245 pKa = 9.22EE246 pKa = 3.89WLGAQQYY253 pKa = 7.12VTVKK257 pKa = 10.2RR258 pKa = 11.84LYY260 pKa = 10.33RR261 pKa = 11.84EE262 pKa = 3.77PRR264 pKa = 11.84LVKK267 pKa = 9.28WGKK270 pKa = 9.69PSIFLTNSDD279 pKa = 4.04PRR281 pKa = 11.84DD282 pKa = 3.49EE283 pKa = 4.4ATVDD287 pKa = 3.4DD288 pKa = 4.81RR289 pKa = 11.84DD290 pKa = 3.64WLEE293 pKa = 4.06RR294 pKa = 11.84NCDD297 pKa = 4.42FIYY300 pKa = 9.55VQEE303 pKa = 5.02PIFHH307 pKa = 7.21ANTEE311 pKa = 4.14

Molecular weight: 35.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CJ90|A0A2Z5CJ90_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 48 OX=2219125 PE=3 SV=1
MM1 pKa = 7.8PARR4 pKa = 11.84AYY6 pKa = 9.86RR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 9.34SGSYY13 pKa = 9.45RR14 pKa = 11.84GRR16 pKa = 11.84KK17 pKa = 9.06RR18 pKa = 11.84GGPTKK23 pKa = 10.37RR24 pKa = 11.84AWSNYY29 pKa = 8.11KK30 pKa = 10.19RR31 pKa = 11.84STGRR35 pKa = 11.84TRR37 pKa = 11.84PYY39 pKa = 8.19RR40 pKa = 11.84TSRR43 pKa = 11.84TRR45 pKa = 11.84QKK47 pKa = 10.64PMSRR51 pKa = 11.84KK52 pKa = 9.74KK53 pKa = 10.01ILNVTSEE60 pKa = 4.03KK61 pKa = 10.67KK62 pKa = 9.49RR63 pKa = 11.84DD64 pKa = 4.56KK65 pKa = 10.14MLCWTNTIAGTPQGGTTYY83 pKa = 8.82TQSPAILTGAGADD96 pKa = 3.47PYY98 pKa = 11.28LFAWCATARR107 pKa = 11.84DD108 pKa = 4.19NTTSTGGAAHH118 pKa = 7.57AGTKK122 pKa = 9.38FDD124 pKa = 3.59KK125 pKa = 10.21ATRR128 pKa = 11.84TASEE132 pKa = 4.82CYY134 pKa = 8.93MVGLSEE140 pKa = 5.4RR141 pKa = 11.84IEE143 pKa = 4.04IQCADD148 pKa = 3.69GLPWQWRR155 pKa = 11.84RR156 pKa = 11.84ICFTMKK162 pKa = 10.51GGVGLDD168 pKa = 3.5GTLTTGSTFSSYY180 pKa = 11.46SEE182 pKa = 4.15TTSGYY187 pKa = 9.17VRR189 pKa = 11.84TVNSVLLTDD198 pKa = 3.86RR199 pKa = 11.84TSLYY203 pKa = 11.13SLLFAGAQSSDD214 pKa = 2.6WSDD217 pKa = 3.44PMVAPLDD224 pKa = 3.53RR225 pKa = 11.84RR226 pKa = 11.84RR227 pKa = 11.84INVKK231 pKa = 9.65YY232 pKa = 10.7DD233 pKa = 2.94KK234 pKa = 8.42TTSISSGNEE243 pKa = 3.24DD244 pKa = 3.33GVIRR248 pKa = 11.84KK249 pKa = 5.74YY250 pKa = 9.15TRR252 pKa = 11.84WHH254 pKa = 6.58PMRR257 pKa = 11.84KK258 pKa = 7.21TLVYY262 pKa = 10.83DD263 pKa = 3.96DD264 pKa = 5.44DD265 pKa = 4.92EE266 pKa = 4.56NTGAEE271 pKa = 4.41FPAVVSVDD279 pKa = 3.32NKK281 pKa = 10.8QGMGDD286 pKa = 3.48YY287 pKa = 9.68WVLDD291 pKa = 4.39FIKK294 pKa = 10.35PRR296 pKa = 11.84MGSATSNQLSFRR308 pKa = 11.84PEE310 pKa = 3.58TTLYY314 pKa = 7.96WHH316 pKa = 6.68EE317 pKa = 4.11RR318 pKa = 3.51

Molecular weight: 35.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

629

311

318

314.5

35.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.995 ± 0.051

2.067 ± 0.325

7.154 ± 0.982

4.452 ± 0.859

4.769 ± 1.481

9.221 ± 0.273

2.385 ± 0.947

3.18 ± 0.023

5.723 ± 0.165

5.882 ± 0.146

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.385 ± 0.293

2.544 ± 0.395

5.087 ± 0.45

2.226 ± 0.191

7.79 ± 1.287

8.426 ± 0.456

7.79 ± 2.733

4.928 ± 0.346

2.703 ± 0.084

4.293 ± 0.279
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski