Mycobacterium virus Pacc40

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 101 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B5U5E0|B5U5E0_9CAUD Uncharacterized protein OS=Mycobacterium virus Pacc40 OX=563122 GN=94 PE=4 SV=1
MM1 pKa = 7.61TDD3 pKa = 3.76DD4 pKa = 4.64EE5 pKa = 4.56KK6 pKa = 10.83TEE8 pKa = 3.98QLRR11 pKa = 11.84KK12 pKa = 9.31EE13 pKa = 4.18AFASLEE19 pKa = 3.79DD20 pKa = 4.36TIAKK24 pKa = 9.78FADD27 pKa = 3.73LQNQHH32 pKa = 6.16NAVTDD37 pKa = 3.81TGAEE41 pKa = 4.06MAVDD45 pKa = 4.14AVLLIGMQYY54 pKa = 11.04LDD56 pKa = 4.8DD57 pKa = 5.46DD58 pKa = 4.84GDD60 pKa = 3.55RR61 pKa = 11.84GGYY64 pKa = 9.47VNIIPRR70 pKa = 11.84NGWQPGYY77 pKa = 8.74ITAGLLSMAQATVVEE92 pKa = 4.51SHH94 pKa = 6.17TCSGQDD100 pKa = 3.52DD101 pKa = 3.85

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B5U5A8|B5U5A8_9CAUD Uncharacterized protein OS=Mycobacterium virus Pacc40 OX=563122 GN=62 PE=4 SV=1
MM1 pKa = 7.01TAEE4 pKa = 3.81SMLWFRR10 pKa = 11.84ARR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84SHH16 pKa = 6.55RR17 pKa = 11.84SAWGHH22 pKa = 5.8PRR24 pKa = 11.84PPAPPKK30 pKa = 8.81PQPITGEE37 pKa = 4.07PMSNLTPEE45 pKa = 4.02QLEE48 pKa = 4.41AIAYY52 pKa = 8.8IVLAFTGPPSLAYY65 pKa = 10.09FLVKK69 pKa = 10.51GLFRR73 pKa = 6.02

Molecular weight: 8.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

101

0

101

18797

30

1341

186.1

20.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.177 ± 0.457

1.213 ± 0.184

6.645 ± 0.237

5.958 ± 0.27

2.947 ± 0.197

9.033 ± 0.551

2.304 ± 0.216

4.315 ± 0.209

3.384 ± 0.185

7.379 ± 0.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.122

3.458 ± 0.167

6.044 ± 0.228

3.596 ± 0.208

6.847 ± 0.405

5.942 ± 0.26

6.506 ± 0.287

7.326 ± 0.266

2.288 ± 0.158

2.458 ± 0.134
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski