Gibbsiella quercinecans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Gibbsiella

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4735 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A250B2H6|A0A250B2H6_9GAMM ABC transporter OS=Gibbsiella quercinecans OX=929813 GN=AWC35_14430 PE=3 SV=1
MM1 pKa = 7.31QMVIIHH7 pKa = 6.19HH8 pKa = 6.65WGEE11 pKa = 4.11GMLNTLNNINKK22 pKa = 8.36EE23 pKa = 4.21LCDD26 pKa = 4.75LDD28 pKa = 5.99CPDD31 pKa = 5.77DD32 pKa = 5.68DD33 pKa = 5.02GADD36 pKa = 3.57DD37 pKa = 3.7EE38 pKa = 5.01TINRR42 pKa = 11.84NIMIVSLIMSGVLLEE57 pKa = 4.11YY58 pKa = 10.26SIYY61 pKa = 9.7MCC63 pKa = 5.71

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A250AWX5|A0A250AWX5_9GAMM ABC transporter domain-containing protein OS=Gibbsiella quercinecans OX=929813 GN=AWC35_01885 PE=4 SV=1
MM1 pKa = 7.41VKK3 pKa = 10.19PFSLTAGIFPYY14 pKa = 10.3LNRR17 pKa = 11.84MWRR20 pKa = 11.84LVMTGCCFILFALGGLWLSLGWMNLLRR47 pKa = 11.84VVQPDD52 pKa = 2.87KK53 pKa = 10.96RR54 pKa = 11.84KK55 pKa = 9.8RR56 pKa = 11.84RR57 pKa = 11.84QQARR61 pKa = 11.84RR62 pKa = 11.84SIATSFRR69 pKa = 11.84FFLSCARR76 pKa = 11.84ATGVLDD82 pKa = 3.47YY83 pKa = 10.54RR84 pKa = 11.84IEE86 pKa = 4.2GLEE89 pKa = 3.79TLQRR93 pKa = 11.84EE94 pKa = 4.38RR95 pKa = 11.84GCLVVANHH103 pKa = 6.57PTLIDD108 pKa = 3.72YY109 pKa = 10.62VLLASVMPEE118 pKa = 3.51VDD120 pKa = 4.16CLVKK124 pKa = 10.67ADD126 pKa = 3.8LQRR129 pKa = 11.84NIFFRR134 pKa = 11.84GVIRR138 pKa = 11.84AADD141 pKa = 3.69YY142 pKa = 10.83LINSQADD149 pKa = 3.67SLLPACRR156 pKa = 11.84QRR158 pKa = 11.84LAQGDD163 pKa = 4.08VILIFPEE170 pKa = 4.63GTRR173 pKa = 11.84TRR175 pKa = 11.84PGQPLALQRR184 pKa = 11.84GAANIAVRR192 pKa = 11.84CGCDD196 pKa = 3.13LRR198 pKa = 11.84VVHH201 pKa = 6.69IRR203 pKa = 11.84CSQQTLGKK211 pKa = 9.62HH212 pKa = 4.86SRR214 pKa = 11.84WYY216 pKa = 10.15QIPNEE221 pKa = 4.32KK222 pKa = 10.07PLFTLTVTQRR232 pKa = 11.84VSSASFITSHH242 pKa = 7.43DD243 pKa = 4.08ALPLAARR250 pKa = 11.84RR251 pKa = 11.84LNRR254 pKa = 11.84FLQHH258 pKa = 6.92ALTPEE263 pKa = 4.07HH264 pKa = 6.88

Molecular weight: 29.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4735

0

4735

1558740

28

3317

329.2

36.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.72 ± 0.042

1.058 ± 0.012

4.987 ± 0.025

5.231 ± 0.032

3.792 ± 0.024

7.643 ± 0.03

2.282 ± 0.018

5.719 ± 0.033

3.776 ± 0.033

11.229 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.584 ± 0.016

3.56 ± 0.026

4.68 ± 0.023

4.906 ± 0.036

5.816 ± 0.028

5.702 ± 0.03

5.031 ± 0.028

6.975 ± 0.029

1.436 ± 0.019

2.873 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski