Duck circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus

Average proteome isoelectric point is 7.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I2CZK4|I2CZK4_9CIRC Capsid protein OS=Duck circovirus OX=324685 GN=Cap PE=3 SV=1
MM1 pKa = 7.62AKK3 pKa = 10.03SGNYY7 pKa = 9.34SYY9 pKa = 11.03KK10 pKa = 10.22RR11 pKa = 11.84WVFTINNPTFEE22 pKa = 5.38DD23 pKa = 4.37YY24 pKa = 11.38VHH26 pKa = 6.99VLEE29 pKa = 6.12FCTLDD34 pKa = 3.2NCKK37 pKa = 9.85FAIVGEE43 pKa = 4.22EE44 pKa = 3.75KK45 pKa = 10.66GANGTPHH52 pKa = 6.68LQGFLNLRR60 pKa = 11.84SNARR64 pKa = 11.84AAALEE69 pKa = 3.96EE70 pKa = 4.42SLGGRR75 pKa = 11.84AWLSRR80 pKa = 11.84ARR82 pKa = 11.84GSDD85 pKa = 3.31EE86 pKa = 5.71DD87 pKa = 4.0NEE89 pKa = 4.41EE90 pKa = 4.14YY91 pKa = 10.26CAKK94 pKa = 10.09EE95 pKa = 3.72STYY98 pKa = 10.94LRR100 pKa = 11.84VGEE103 pKa = 4.2PVSKK107 pKa = 10.61GRR109 pKa = 11.84SSDD112 pKa = 3.5LAEE115 pKa = 4.15ATSAVMAGVPLTEE128 pKa = 4.41VARR131 pKa = 11.84KK132 pKa = 9.21FPTTYY137 pKa = 10.62VIFGRR142 pKa = 11.84GLEE145 pKa = 4.13RR146 pKa = 11.84LRR148 pKa = 11.84HH149 pKa = 6.05LIVEE153 pKa = 4.56TQRR156 pKa = 11.84DD157 pKa = 3.66WKK159 pKa = 9.91TEE161 pKa = 4.0VIVLIGPPGTGKK173 pKa = 10.04SRR175 pKa = 11.84YY176 pKa = 9.4AFEE179 pKa = 4.95FPAEE183 pKa = 3.93NKK185 pKa = 9.86YY186 pKa = 10.59YY187 pKa = 10.65KK188 pKa = 10.16PRR190 pKa = 11.84GKK192 pKa = 8.91WWDD195 pKa = 3.9GYY197 pKa = 10.85SGNDD201 pKa = 3.3VVVMDD206 pKa = 5.83DD207 pKa = 3.98FYY209 pKa = 11.92GWLPYY214 pKa = 10.72DD215 pKa = 4.0DD216 pKa = 5.54LLRR219 pKa = 11.84ITDD222 pKa = 4.33RR223 pKa = 11.84YY224 pKa = 8.36PLRR227 pKa = 11.84VEE229 pKa = 4.85FKK231 pKa = 10.75GGMTQFVAKK240 pKa = 9.46TLIITSNRR248 pKa = 11.84EE249 pKa = 3.17PRR251 pKa = 11.84DD252 pKa = 3.33WYY254 pKa = 10.83KK255 pKa = 11.13SEE257 pKa = 4.41FDD259 pKa = 3.61LSALYY264 pKa = 10.34RR265 pKa = 11.84RR266 pKa = 11.84INKK269 pKa = 9.29YY270 pKa = 10.12LVYY273 pKa = 10.73NIDD276 pKa = 3.46KK277 pKa = 10.73YY278 pKa = 11.39EE279 pKa = 4.14PAQACTLPFPINYY292 pKa = 9.74

Molecular weight: 33.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I2CZK4|I2CZK4_9CIRC Capsid protein OS=Duck circovirus OX=324685 GN=Cap PE=3 SV=1
MM1 pKa = 8.09RR2 pKa = 11.84GRR4 pKa = 11.84TYY6 pKa = 10.46RR7 pKa = 11.84RR8 pKa = 11.84AYY10 pKa = 9.23RR11 pKa = 11.84GRR13 pKa = 11.84RR14 pKa = 11.84KK15 pKa = 9.89RR16 pKa = 11.84RR17 pKa = 11.84GLRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84FRR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84LRR29 pKa = 11.84IARR32 pKa = 11.84PRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84FSVVTYY42 pKa = 10.07KK43 pKa = 9.3VTRR46 pKa = 11.84NTVFGFFGSQTGPTAAGKK64 pKa = 8.0WQSLSLEE71 pKa = 4.75DD72 pKa = 3.59GAQYY76 pKa = 10.5TDD78 pKa = 3.7PPARR82 pKa = 11.84GNNICGLNMRR92 pKa = 11.84WAMFGDD98 pKa = 3.86TNSYY102 pKa = 7.24MTGSTPFYY110 pKa = 9.79HH111 pKa = 6.53YY112 pKa = 10.3PYY114 pKa = 9.79DD115 pKa = 3.64YY116 pKa = 11.93YY117 pKa = 10.47MIKK120 pKa = 10.47GVAITLRR127 pKa = 11.84PAYY130 pKa = 10.29NIYY133 pKa = 10.31QKK135 pKa = 11.11SKK137 pKa = 7.74TQGSTVIDD145 pKa = 3.45KK146 pKa = 10.75DD147 pKa = 3.68GQIVKK152 pKa = 9.55TSTTGWSIDD161 pKa = 3.79PYY163 pKa = 10.79GSTSSRR169 pKa = 11.84RR170 pKa = 11.84TWDD173 pKa = 3.07PSRR176 pKa = 11.84VHH178 pKa = 6.3RR179 pKa = 11.84RR180 pKa = 11.84YY181 pKa = 10.13FIPKK185 pKa = 9.62PIIQRR190 pKa = 11.84AGEE193 pKa = 4.15GTKK196 pKa = 10.74YY197 pKa = 9.78STFFLGGRR205 pKa = 11.84NFTWINCAQDD215 pKa = 3.56QVVHH219 pKa = 6.74YY220 pKa = 10.14GMGMSLRR227 pKa = 11.84KK228 pKa = 9.19PDD230 pKa = 3.16NTTGVNAQYY239 pKa = 10.62DD240 pKa = 3.7IEE242 pKa = 4.33AQFTFYY248 pKa = 10.69IKK250 pKa = 10.53FGQFTGFF257 pKa = 3.35

Molecular weight: 29.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

549

257

292

274.5

31.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.193 ± 0.762

1.093 ± 0.211

4.918 ± 0.428

4.554 ± 2.275

5.464 ± 0.511

8.743 ± 0.923

1.093 ± 0.05

4.736 ± 0.478

5.282 ± 0.412

5.829 ± 1.824

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.004 ± 0.484

4.372 ± 0.323

4.918 ± 0.167

2.914 ± 1.179

10.018 ± 1.896

5.829 ± 0.267

7.65 ± 1.395

5.464 ± 0.795

2.186 ± 0.161

6.74 ± 0.178
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski