Xanthomonas phage XAJ2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 79 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I9L2H5|A0A1I9L2H5_9CAUD Uncharacterized protein OS=Xanthomonas phage XAJ2 OX=1775249 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 10.29RR3 pKa = 11.84FIIEE7 pKa = 3.98VVCANASTLQEE18 pKa = 4.26ALDD21 pKa = 3.93FASACIGEE29 pKa = 4.7DD30 pKa = 3.18PTRR33 pKa = 11.84YY34 pKa = 9.84NQMQVDD40 pKa = 4.06EE41 pKa = 4.64TDD43 pKa = 3.68EE44 pKa = 4.01QLSDD48 pKa = 3.51PDD50 pKa = 4.31YY51 pKa = 10.27IKK53 pKa = 11.11SSITRR58 pKa = 11.84NEE60 pKa = 3.49

Molecular weight: 6.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I9L2I4|A0A1I9L2I4_9CAUD Uncharacterized protein OS=Xanthomonas phage XAJ2 OX=1775249 PE=4 SV=1
MM1 pKa = 7.65SYY3 pKa = 10.77AISSKK8 pKa = 10.91AKK10 pKa = 8.57IPKK13 pKa = 9.42RR14 pKa = 11.84YY15 pKa = 9.02RR16 pKa = 11.84PKK18 pKa = 10.16RR19 pKa = 11.84PPVPVVNAMAAYY31 pKa = 8.19AKK33 pKa = 9.98QYY35 pKa = 9.76KK36 pKa = 8.88RR37 pKa = 11.84VYY39 pKa = 9.78GIQPTYY45 pKa = 11.15VYY47 pKa = 10.73DD48 pKa = 3.75HH49 pKa = 6.18KK50 pKa = 10.01TKK52 pKa = 10.64FIRR55 pKa = 11.84VGEE58 pKa = 4.2SGGVSLQRR66 pKa = 11.84IRR68 pKa = 11.84QLTAQLQLRR77 pKa = 11.84AGEE80 pKa = 4.19EE81 pKa = 4.21SS82 pKa = 3.26

Molecular weight: 9.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

79

0

79

15513

37

1287

196.4

21.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.411 ± 0.684

0.993 ± 0.166

5.209 ± 0.201

6.311 ± 0.33

3.913 ± 0.161

7.252 ± 0.241

1.508 ± 0.189

5.628 ± 0.178

6.233 ± 0.391

7.909 ± 0.258

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.372 ± 0.175

4.809 ± 0.176

4.39 ± 0.276

4.184 ± 0.398

5.073 ± 0.16

6.466 ± 0.331

5.995 ± 0.365

6.53 ± 0.273

1.612 ± 0.147

3.204 ± 0.202
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski