Heterobasidion partitivirus 12

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Alphapartitivirus

Average proteome isoelectric point is 7.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8PR73|W8PR73_9VIRU Capsid protein OS=Heterobasidion partitivirus 12 OX=1469905 PE=4 SV=1
MM1 pKa = 7.82SSLPDD6 pKa = 3.58FASMNEE12 pKa = 4.04SEE14 pKa = 4.06RR15 pKa = 11.84LKK17 pKa = 11.04YY18 pKa = 10.54FEE20 pKa = 4.48EE21 pKa = 4.17QQKK24 pKa = 9.61KK25 pKa = 9.44QKK27 pKa = 10.85DD28 pKa = 3.68LVDD31 pKa = 3.55QSIKK35 pKa = 10.85AKK37 pKa = 8.52QTMSAMRR44 pKa = 11.84VRR46 pKa = 11.84PVFQQAIDD54 pKa = 3.93GAKK57 pKa = 9.96SASKK61 pKa = 10.64SSAVPTKK68 pKa = 10.44AVPPPPFSGTSASANNMLRR87 pKa = 11.84LAFGEE92 pKa = 4.62SPFRR96 pKa = 11.84PKK98 pKa = 10.41QRR100 pKa = 11.84FGQNGFIPDD109 pKa = 3.69SQFLFTLLSIMDD121 pKa = 3.79MKK123 pKa = 9.28MTSTRR128 pKa = 11.84KK129 pKa = 9.58FIEE132 pKa = 4.55GAEE135 pKa = 4.24FWSPLISQYY144 pKa = 11.59YY145 pKa = 7.47MAVLVFVQIFRR156 pKa = 11.84AMHH159 pKa = 5.53EE160 pKa = 4.35AGLLSGEE167 pKa = 4.17AADD170 pKa = 5.64VYY172 pKa = 11.58DD173 pKa = 4.91LFCGHH178 pKa = 6.36SPAISLASLPVPGPFLNLLAQYY200 pKa = 10.05AVHH203 pKa = 6.68IPHH206 pKa = 7.04LVDD209 pKa = 3.84MDD211 pKa = 5.15NICPMIPNNLDD222 pKa = 3.24TTNTNFYY229 pKa = 10.06KK230 pKa = 10.82FQGLCSNLLGRR241 pKa = 11.84LPNVPYY247 pKa = 10.88LLDD250 pKa = 3.8QIALLRR256 pKa = 11.84DD257 pKa = 3.65NLVAAPVSIDD267 pKa = 3.18VANQGRR273 pKa = 11.84VLHH276 pKa = 5.81RR277 pKa = 11.84TMFGQALFAINAAPGNAAQWNTRR300 pKa = 11.84VPYY303 pKa = 10.2GAAVPDD309 pKa = 3.5NAKK312 pKa = 10.73YY313 pKa = 10.28ISCDD317 pKa = 3.05PASRR321 pKa = 11.84HH322 pKa = 5.69PFFLNRR328 pKa = 11.84GLISQMTDD336 pKa = 2.74YY337 pKa = 11.39AALINVNTPAAHH349 pKa = 6.12NAAAITPSWTQFLGLDD365 pKa = 3.44NMPFFLQVVRR375 pKa = 11.84IMSWYY380 pKa = 9.16SKK382 pKa = 9.33FWQGSTDD389 pKa = 3.58LASFSPNGHH398 pKa = 5.99TSGQNTFTLVNKK410 pKa = 8.75PANLAAITDD419 pKa = 3.51ARR421 pKa = 11.84FYY423 pKa = 11.53SLDD426 pKa = 3.44LKK428 pKa = 10.76MKK430 pKa = 10.13GVARR434 pKa = 11.84NPLAPEE440 pKa = 4.08SDD442 pKa = 3.73SFDD445 pKa = 3.71AATGPINLSWTPADD459 pKa = 3.6MYY461 pKa = 10.98GGKK464 pKa = 9.99LDD466 pKa = 3.75TTAITATEE474 pKa = 4.36ANLSTHH480 pKa = 5.8RR481 pKa = 11.84QGGPFFTEE489 pKa = 4.21SIVDD493 pKa = 3.22ITGEE497 pKa = 4.02INPTSAYY504 pKa = 10.54AGILNQYY511 pKa = 8.75YY512 pKa = 9.59YY513 pKa = 11.47SSVALKK519 pKa = 10.59NN520 pKa = 3.48

Molecular weight: 56.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W8PR73|W8PR73_9VIRU Capsid protein OS=Heterobasidion partitivirus 12 OX=1469905 PE=4 SV=1
MM1 pKa = 6.65QTLLSAVYY9 pKa = 10.07SIRR12 pKa = 11.84DD13 pKa = 3.74AIFGKK18 pKa = 8.31TLSEE22 pKa = 3.74PHH24 pKa = 5.94GLNVNFHH31 pKa = 6.78FDD33 pKa = 3.41GYY35 pKa = 9.56VTDD38 pKa = 4.91EE39 pKa = 4.82IKK41 pKa = 10.17TSIPPRR47 pKa = 11.84VEE49 pKa = 3.19MWYY52 pKa = 10.69SDD54 pKa = 3.59YY55 pKa = 11.48QKK57 pKa = 10.78FLNPIIRR64 pKa = 11.84ANFTGAEE71 pKa = 3.86ADD73 pKa = 3.96KK74 pKa = 10.79IINGYY79 pKa = 7.67HH80 pKa = 6.3HH81 pKa = 7.62PVATIPFMVEE91 pKa = 3.51NLKK94 pKa = 10.99KK95 pKa = 10.65GDD97 pKa = 4.09LSDD100 pKa = 4.26HH101 pKa = 6.45PVPHH105 pKa = 7.3DD106 pKa = 3.44EE107 pKa = 4.27HH108 pKa = 7.69YY109 pKa = 11.18LRR111 pKa = 11.84ARR113 pKa = 11.84KK114 pKa = 8.14MAADD118 pKa = 4.28AFRR121 pKa = 11.84PPRR124 pKa = 11.84PIRR127 pKa = 11.84PVHH130 pKa = 5.54FADD133 pKa = 4.29LRR135 pKa = 11.84FYY137 pKa = 10.34NWNWHH142 pKa = 6.18PNVEE146 pKa = 4.03EE147 pKa = 4.33PYY149 pKa = 9.99YY150 pKa = 10.35SNKK153 pKa = 9.61RR154 pKa = 11.84AQEE157 pKa = 4.14YY158 pKa = 9.3VQAAHH163 pKa = 6.44TLGLTPDD170 pKa = 3.18ARR172 pKa = 11.84MSFGNLRR179 pKa = 11.84DD180 pKa = 3.71YY181 pKa = 11.82VFMDD185 pKa = 3.24TRR187 pKa = 11.84HH188 pKa = 5.91YY189 pKa = 10.6LHH191 pKa = 6.45QIKK194 pKa = 10.29RR195 pKa = 11.84NEE197 pKa = 3.67ISNPKK202 pKa = 8.3TLWPLMKK209 pKa = 9.9IHH211 pKa = 6.61VKK213 pKa = 9.84PALTGTDD220 pKa = 3.31EE221 pKa = 3.97QKK223 pKa = 10.35IRR225 pKa = 11.84VIYY228 pKa = 9.84GVSKK232 pKa = 10.55RR233 pKa = 11.84HH234 pKa = 5.93VLPQCMFFWPLFRR247 pKa = 11.84HH248 pKa = 5.89YY249 pKa = 10.4IEE251 pKa = 5.74NDD253 pKa = 3.07TDD255 pKa = 3.84PLLWGFEE262 pKa = 4.32TILGGMMKK270 pKa = 10.3LNSLMHH276 pKa = 6.73RR277 pKa = 11.84LYY279 pKa = 10.19FQTFVTVDD287 pKa = 2.64WSGFDD292 pKa = 3.55LRR294 pKa = 11.84SLFSIQRR301 pKa = 11.84EE302 pKa = 4.03IFDD305 pKa = 3.3DD306 pKa = 2.94WRR308 pKa = 11.84TYY310 pKa = 10.99FDD312 pKa = 4.36FSNGYY317 pKa = 9.29IPTVWYY323 pKa = 8.88PNSTADD329 pKa = 4.25PIQLEE334 pKa = 4.52RR335 pKa = 11.84LWNWQRR341 pKa = 11.84DD342 pKa = 3.54ACFNMPFVMPDD353 pKa = 2.68KK354 pKa = 10.69SVYY357 pKa = 9.76RR358 pKa = 11.84RR359 pKa = 11.84LFRR362 pKa = 11.84AIPSGLFVTQFLDD375 pKa = 3.21SHH377 pKa = 6.7YY378 pKa = 10.74NYY380 pKa = 10.34IMLLTILSAMGFDD393 pKa = 3.29ITIEE397 pKa = 4.13RR398 pKa = 11.84IRR400 pKa = 11.84ILVQGDD406 pKa = 3.91DD407 pKa = 3.73SLKK410 pKa = 10.81NLIFFIPANQHH421 pKa = 6.58DD422 pKa = 4.28NFKK425 pKa = 11.45AEE427 pKa = 4.29FQRR430 pKa = 11.84LATYY434 pKa = 10.81YY435 pKa = 9.15FDD437 pKa = 3.98HH438 pKa = 6.68VARR441 pKa = 11.84PEE443 pKa = 3.64KK444 pKa = 10.28TEE446 pKa = 4.35IYY448 pKa = 10.37NSPQGVTVLGYY459 pKa = 9.26TNNNGFPTRR468 pKa = 11.84DD469 pKa = 3.91PIKK472 pKa = 10.93LMAQLYY478 pKa = 9.53HH479 pKa = 6.54PRR481 pKa = 11.84QVGEE485 pKa = 3.82RR486 pKa = 11.84WKK488 pKa = 10.68SVLMAKK494 pKa = 10.26CAGFAYY500 pKa = 10.12ASAYY504 pKa = 10.34NYY506 pKa = 9.7PKK508 pKa = 9.6VTATLKK514 pKa = 8.79TVYY517 pKa = 10.28YY518 pKa = 10.16KK519 pKa = 10.9LAAKK523 pKa = 10.0GFSPAALRR531 pKa = 11.84TQRR534 pKa = 11.84DD535 pKa = 3.05IVLFGEE541 pKa = 4.92AKK543 pKa = 9.82FQVPTDD549 pKa = 3.74HH550 pKa = 7.07FPTAEE555 pKa = 3.8EE556 pKa = 4.32VQRR559 pKa = 11.84HH560 pKa = 4.9LRR562 pKa = 11.84VPYY565 pKa = 10.16KK566 pKa = 9.9RR567 pKa = 11.84TEE569 pKa = 4.09EE570 pKa = 4.17DD571 pKa = 3.45SEE573 pKa = 5.6SYY575 pKa = 10.98FPMKK579 pKa = 10.46HH580 pKa = 6.05FLDD583 pKa = 4.86FAA585 pKa = 6.06

Molecular weight: 68.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1105

520

585

552.5

62.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.688 ± 1.65

0.633 ± 0.091

5.52 ± 0.348

3.529 ± 0.689

6.697 ± 0.363

4.887 ± 0.462

2.896 ± 0.779

5.339 ± 0.227

4.434 ± 0.393

8.688 ± 0.363

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.258 ± 0.136

5.52 ± 0.552

6.878 ± 0.159

4.163 ± 0.431

5.158 ± 1.006

6.425 ± 1.362

5.792 ± 0.015

5.339 ± 0.227

1.629 ± 0.318

4.525 ± 0.84
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski