Propioniferax innocua

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria;

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2528 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A542ZSZ2|A0A542ZSZ2_9ACTN BglG family transcriptional antiterminator OS=Propioniferax innocua OX=1753 GN=FB460_1288 PE=4 SV=1
MM1 pKa = 7.52TEE3 pKa = 4.35PIKK6 pKa = 10.94VATVGDD12 pKa = 3.83IDD14 pKa = 4.6DD15 pKa = 5.17DD16 pKa = 4.11EE17 pKa = 7.37AIVVPGDD24 pKa = 3.39VNGTGNPIAVFFTEE38 pKa = 4.1DD39 pKa = 3.08EE40 pKa = 4.72YY41 pKa = 12.02YY42 pKa = 11.21ALDD45 pKa = 3.89DD46 pKa = 4.05TCTHH50 pKa = 6.89AEE52 pKa = 3.85ASLADD57 pKa = 3.85GWVEE61 pKa = 3.94GCEE64 pKa = 4.23VEE66 pKa = 5.15CPIHH70 pKa = 6.12AAKK73 pKa = 10.57FNLCTGQAMNLPATIPVRR91 pKa = 11.84THH93 pKa = 5.09KK94 pKa = 11.14VEE96 pKa = 3.9VRR98 pKa = 11.84GDD100 pKa = 4.25EE101 pKa = 4.02IWLHH105 pKa = 6.08PGVPVEE111 pKa = 4.19GAVLEE116 pKa = 4.38ADD118 pKa = 3.49QQ119 pKa = 4.88

Molecular weight: 12.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A542ZDU1|A0A542ZDU1_9ACTN Propane 2-monooxygenase OS=Propioniferax innocua OX=1753 GN=FB460_2312 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84THH17 pKa = 6.18GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SIISSRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.83GRR40 pKa = 11.84AKK42 pKa = 10.71LAGG45 pKa = 3.63

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2528

0

2528

847396

29

2890

335.2

36.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.816 ± 0.056

0.835 ± 0.013

6.391 ± 0.037

6.374 ± 0.05

3.002 ± 0.033

8.994 ± 0.051

2.392 ± 0.025

4.373 ± 0.032

2.275 ± 0.035

9.519 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.376 ± 0.022

2.154 ± 0.022

5.681 ± 0.041

3.149 ± 0.028

7.136 ± 0.054

5.442 ± 0.034

6.098 ± 0.04

8.609 ± 0.041

1.57 ± 0.022

1.813 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski