Ichthyobacterium seriolicida

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Ichthyobacteriaceae; Ichthyobacterium

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1467 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J1E8N2|A0A1J1E8N2_9FLAO Signal peptidase I OS=Ichthyobacterium seriolicida OX=242600 GN=JBKA6_0278 PE=3 SV=1
MM1 pKa = 6.82NQVPKK6 pKa = 10.59FLLADD11 pKa = 3.46NSNYY15 pKa = 9.34PDD17 pKa = 3.84SIYY20 pKa = 10.89VVHH23 pKa = 6.32TEE25 pKa = 4.07YY26 pKa = 10.46PRR28 pKa = 11.84FIYY31 pKa = 10.26DD32 pKa = 3.5ISNDD36 pKa = 4.0EE37 pKa = 5.28IILDD41 pKa = 4.24DD42 pKa = 6.22DD43 pKa = 5.72DD44 pKa = 6.5IEE46 pKa = 6.56DD47 pKa = 3.82EE48 pKa = 4.31DD49 pKa = 5.08KK50 pKa = 11.64EE51 pKa = 4.68NITQEE56 pKa = 3.92LSSLIEE62 pKa = 3.96EE63 pKa = 4.32AQAFYY68 pKa = 10.82DD69 pKa = 4.21SEE71 pKa = 3.85MSEE74 pKa = 4.09YY75 pKa = 11.25DD76 pKa = 3.19KK77 pKa = 11.76

Molecular weight: 9.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J1E9C5|A0A1J1E9C5_9FLAO Transposase OS=Ichthyobacterium seriolicida OX=242600 GN=JBKA6_0494 PE=4 SV=1
MM1 pKa = 7.24GHH3 pKa = 7.48LGLTPQSIYY12 pKa = 11.25KK13 pKa = 10.27LGTYY17 pKa = 9.6KK18 pKa = 11.17GEE20 pKa = 4.3GKK22 pKa = 10.44RR23 pKa = 11.84IRR25 pKa = 11.84GSQTAHH31 pKa = 6.07RR32 pKa = 11.84RR33 pKa = 11.84CKK35 pKa = 9.55RR36 pKa = 11.84TLEE39 pKa = 3.68SWMFCNSFRR48 pKa = 11.84KK49 pKa = 10.12NSIGTGKK56 pKa = 10.38KK57 pKa = 8.6EE58 pKa = 3.71

Molecular weight: 6.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1467

0

1467

549746

37

2339

374.7

41.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.446 ± 0.132

0.782 ± 0.017

6.075 ± 0.04

6.268 ± 0.051

4.599 ± 0.059

6.39 ± 0.111

1.524 ± 0.024

8.896 ± 0.075

8.988 ± 0.056

8.139 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.951 ± 0.039

6.437 ± 0.069

3.118 ± 0.046

2.55 ± 0.038

3.32 ± 0.046

8.457 ± 0.066

6.443 ± 0.111

6.145 ± 0.053

0.696 ± 0.019

3.772 ± 0.048
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski