Caryophanon tenue

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Caryophanon

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3090 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C0YBX0|A0A1C0YBX0_9BACL GCN5 family acetyltransferase OS=Caryophanon tenue OX=33978 GN=A6M13_03605 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84KK3 pKa = 8.45YY4 pKa = 10.89AVMVGAVLMLVACNEE19 pKa = 4.06QVNEE23 pKa = 4.11EE24 pKa = 4.5TIKK27 pKa = 9.36PTPVTDD33 pKa = 3.92TAATEE38 pKa = 4.12PVGGEE43 pKa = 3.8TSEE46 pKa = 4.12TRR48 pKa = 11.84EE49 pKa = 3.91SEE51 pKa = 4.13GRR53 pKa = 11.84DD54 pKa = 3.48DD55 pKa = 4.11EE56 pKa = 4.49QVVIPEE62 pKa = 4.07PQMDD66 pKa = 3.93EE67 pKa = 4.15EE68 pKa = 4.42DD69 pKa = 4.1VEE71 pKa = 4.76VSDD74 pKa = 5.84EE75 pKa = 3.96VDD77 pKa = 3.34EE78 pKa = 4.65PQEE81 pKa = 4.23SVSQEE86 pKa = 3.64NVTEE90 pKa = 4.75DD91 pKa = 3.9EE92 pKa = 4.27LLMWIYY98 pKa = 11.15KK99 pKa = 9.22MEE101 pKa = 4.49DD102 pKa = 2.58WSGYY106 pKa = 9.87SSLLRR111 pKa = 11.84IEE113 pKa = 4.92NVYY116 pKa = 11.17DD117 pKa = 3.96DD118 pKa = 4.34EE119 pKa = 4.53QLNTMTQQEE128 pKa = 4.48TTYY131 pKa = 10.95VWMPEE136 pKa = 3.6QLYY139 pKa = 8.28TVTQHH144 pKa = 6.75AGISTTLIEE153 pKa = 4.14QYY155 pKa = 7.91MTEE158 pKa = 3.97EE159 pKa = 3.64EE160 pKa = 4.29AYY162 pKa = 10.1EE163 pKa = 4.13RR164 pKa = 11.84LNLDD168 pKa = 2.54EE169 pKa = 4.47WLPLEE174 pKa = 4.31GEE176 pKa = 4.3RR177 pKa = 11.84AYY179 pKa = 11.27SPLPAKK185 pKa = 10.13MSFFEE190 pKa = 5.42LMLEE194 pKa = 4.19SSAYY198 pKa = 9.05TVEE201 pKa = 4.2QQNEE205 pKa = 4.02AAHH208 pKa = 5.29VTFTVQPDD216 pKa = 3.94NIAYY220 pKa = 9.46VYY222 pKa = 11.55AMLQRR227 pKa = 11.84AFNIQMDD234 pKa = 4.16EE235 pKa = 4.27TVTAEE240 pKa = 4.12DD241 pKa = 3.96IYY243 pKa = 11.63AEE245 pKa = 3.74FHH247 pKa = 6.15YY248 pKa = 10.54EE249 pKa = 4.89DD250 pKa = 5.72RR251 pKa = 11.84FLQQYY256 pKa = 10.01KK257 pKa = 8.67ITVDD261 pKa = 4.18FDD263 pKa = 3.51AAEE266 pKa = 4.38DD267 pKa = 3.93DD268 pKa = 3.93MPKK271 pKa = 10.66EE272 pKa = 3.89LVIDD276 pKa = 3.89EE277 pKa = 5.42AFTDD281 pKa = 3.94MNQVEE286 pKa = 4.84ALPARR291 pKa = 11.84DD292 pKa = 3.5TLL294 pKa = 4.03

Molecular weight: 33.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C0YLC6|A0A1C0YLC6_9BACL Fumarate hydratase class II OS=Caryophanon tenue OX=33978 GN=fumC PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.54QPKK8 pKa = 9.44KK9 pKa = 7.96RR10 pKa = 11.84KK11 pKa = 8.69HH12 pKa = 5.94SKK14 pKa = 8.54VHH16 pKa = 5.66GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.31NGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 9.36KK37 pKa = 10.05GRR39 pKa = 11.84KK40 pKa = 8.66VLSAA44 pKa = 4.05

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3090

0

3090

949518

37

2089

307.3

34.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.859 ± 0.044

0.693 ± 0.011

5.159 ± 0.034

7.089 ± 0.048

4.391 ± 0.037

6.352 ± 0.041

2.372 ± 0.027

7.237 ± 0.04

5.291 ± 0.038

9.478 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.881 ± 0.025

3.785 ± 0.031

3.506 ± 0.026

4.833 ± 0.044

4.189 ± 0.03

5.123 ± 0.034

6.58 ± 0.043

7.577 ± 0.04

0.901 ± 0.014

3.702 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski