Giant panda associated partiti-like virus

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 8.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A220IGT0|A0A220IGT0_9VIRU RdRp OS=Giant panda associated partiti-like virus OX=2016462 PE=4 SV=1
MM1 pKa = 6.82EE2 pKa = 5.88HH3 pKa = 7.31SMKK6 pKa = 9.58TWHH9 pKa = 6.91KK10 pKa = 10.5NLDD13 pKa = 3.83KK14 pKa = 10.92EE15 pKa = 4.71SSRR18 pKa = 11.84EE19 pKa = 3.72DD20 pKa = 3.47DD21 pKa = 4.13YY22 pKa = 12.05QPVIYY27 pKa = 9.28TLSRR31 pKa = 11.84EE32 pKa = 4.1IVRR35 pKa = 11.84EE36 pKa = 3.6RR37 pKa = 11.84STQLNLNQEE46 pKa = 4.34VTSLQEE52 pKa = 3.91GPYY55 pKa = 8.12MWKK58 pKa = 8.2TVPYY62 pKa = 9.4KK63 pKa = 10.58LAALRR68 pKa = 11.84EE69 pKa = 4.27WNLRR73 pKa = 11.84MSRR76 pKa = 11.84SEE78 pKa = 3.88TPEE81 pKa = 3.43IFDD84 pKa = 3.63PVVAHH89 pKa = 6.46VLRR92 pKa = 11.84EE93 pKa = 3.82QGFEE97 pKa = 3.99VDD99 pKa = 3.13SKK101 pKa = 11.35KK102 pKa = 10.77YY103 pKa = 8.9YY104 pKa = 9.96EE105 pKa = 4.19PRR107 pKa = 11.84SVYY110 pKa = 10.35SVEE113 pKa = 4.55KK114 pKa = 10.59FFEE117 pKa = 4.15QLQSFNPSKK126 pKa = 11.0SVFVDD131 pKa = 3.35VKK133 pKa = 10.75DD134 pKa = 3.7RR135 pKa = 11.84HH136 pKa = 4.72VQRR139 pKa = 11.84GIAFAYY145 pKa = 9.72KK146 pKa = 10.45VFGKK150 pKa = 10.82GKK152 pKa = 9.93DD153 pKa = 3.51DD154 pKa = 4.75AYY156 pKa = 11.34LEE158 pKa = 4.24PLEE161 pKa = 5.09LWDD164 pKa = 5.1EE165 pKa = 4.54SIISNWKK172 pKa = 9.1GSAGVTAYY180 pKa = 10.4GQTKK184 pKa = 9.8RR185 pKa = 11.84EE186 pKa = 4.05AFSRR190 pKa = 11.84GILSAKK196 pKa = 10.0RR197 pKa = 11.84ILGQDD202 pKa = 2.97GLARR206 pKa = 11.84RR207 pKa = 11.84KK208 pKa = 9.78PEE210 pKa = 3.94PCLGLTRR217 pKa = 11.84TGKK220 pKa = 9.93NGKK223 pKa = 9.11SRR225 pKa = 11.84LIWGYY230 pKa = 9.24PMSMTLIEE238 pKa = 4.64GSLAKK243 pKa = 10.1PLLGTLTGLNTPMAYY258 pKa = 9.92KK259 pKa = 9.42LTNKK263 pKa = 8.48TLGMKK268 pKa = 9.9ILAASQTKK276 pKa = 8.73KK277 pKa = 9.36WYY279 pKa = 9.49YY280 pKa = 11.03SLDD283 pKa = 3.22ATQFDD288 pKa = 4.22SSIQKK293 pKa = 10.16IMIEE297 pKa = 4.09VAFSIIATHH306 pKa = 6.55FDD308 pKa = 3.35RR309 pKa = 11.84KK310 pKa = 10.83AMYY313 pKa = 10.66DD314 pKa = 3.45DD315 pKa = 4.14VNTVGEE321 pKa = 4.18VLEE324 pKa = 4.18LVRR327 pKa = 11.84DD328 pKa = 4.05YY329 pKa = 11.04FIHH332 pKa = 6.16TPIVMPAGEE341 pKa = 4.18KK342 pKa = 10.75AKK344 pKa = 11.14GNVQGVLYY352 pKa = 9.86YY353 pKa = 10.46GKK355 pKa = 10.15KK356 pKa = 9.76HH357 pKa = 5.35GVPSGSYY364 pKa = 7.69FTQLVDD370 pKa = 3.99SIVNIIVLGTLASKK384 pKa = 10.71FGFYY388 pKa = 10.42LSKK391 pKa = 11.36EE392 pKa = 4.3EE393 pKa = 4.26IFVLGDD399 pKa = 3.44DD400 pKa = 4.95LLFFTNTHH408 pKa = 6.57LDD410 pKa = 3.35VKK412 pKa = 10.74KK413 pKa = 10.48PSTSYY418 pKa = 11.18AKK420 pKa = 9.49STFGMLLKK428 pKa = 10.78

Molecular weight: 48.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A220IGT0|A0A220IGT0_9VIRU RdRp OS=Giant panda associated partiti-like virus OX=2016462 PE=4 SV=1
MM1 pKa = 6.82EE2 pKa = 5.88HH3 pKa = 7.31SMKK6 pKa = 9.58TWHH9 pKa = 6.91KK10 pKa = 10.5NLDD13 pKa = 3.83KK14 pKa = 10.92EE15 pKa = 4.71SSRR18 pKa = 11.84EE19 pKa = 3.72DD20 pKa = 3.47DD21 pKa = 4.13YY22 pKa = 12.05QPVIYY27 pKa = 9.28TLSRR31 pKa = 11.84EE32 pKa = 4.1IVRR35 pKa = 11.84EE36 pKa = 3.6RR37 pKa = 11.84STQLNLNQEE46 pKa = 4.34VTSLQEE52 pKa = 3.91GPYY55 pKa = 8.12MWKK58 pKa = 8.2TVPYY62 pKa = 9.4KK63 pKa = 10.58LAALRR68 pKa = 11.84EE69 pKa = 4.27WNLRR73 pKa = 11.84MSRR76 pKa = 11.84SEE78 pKa = 3.88TPEE81 pKa = 3.43IFDD84 pKa = 3.63PVVAHH89 pKa = 6.46VLRR92 pKa = 11.84EE93 pKa = 3.82QGFEE97 pKa = 3.99VDD99 pKa = 3.13SKK101 pKa = 11.35KK102 pKa = 10.77YY103 pKa = 8.9YY104 pKa = 9.96EE105 pKa = 4.19PRR107 pKa = 11.84SVYY110 pKa = 10.35SVEE113 pKa = 4.55KK114 pKa = 10.59FFEE117 pKa = 4.15QLQSFNPSKK126 pKa = 11.0SVFVDD131 pKa = 3.35VKK133 pKa = 10.75DD134 pKa = 3.7RR135 pKa = 11.84HH136 pKa = 4.72VQRR139 pKa = 11.84GIAFAYY145 pKa = 9.72KK146 pKa = 10.45VFGKK150 pKa = 10.82GKK152 pKa = 9.93DD153 pKa = 3.51DD154 pKa = 4.75AYY156 pKa = 11.34LEE158 pKa = 4.24PLEE161 pKa = 5.09LWDD164 pKa = 5.1EE165 pKa = 4.54SIISNWKK172 pKa = 9.1GSAGVTAYY180 pKa = 10.4GQTKK184 pKa = 9.8RR185 pKa = 11.84EE186 pKa = 4.05AFSRR190 pKa = 11.84GILSAKK196 pKa = 10.0RR197 pKa = 11.84ILGQDD202 pKa = 2.97GLARR206 pKa = 11.84RR207 pKa = 11.84KK208 pKa = 9.78PEE210 pKa = 3.94PCLGLTRR217 pKa = 11.84TGKK220 pKa = 9.93NGKK223 pKa = 9.11SRR225 pKa = 11.84LIWGYY230 pKa = 9.24PMSMTLIEE238 pKa = 4.64GSLAKK243 pKa = 10.1PLLGTLTGLNTPMAYY258 pKa = 9.92KK259 pKa = 9.42LTNKK263 pKa = 8.48TLGMKK268 pKa = 9.9ILAASQTKK276 pKa = 8.73KK277 pKa = 9.36WYY279 pKa = 9.49YY280 pKa = 11.03SLDD283 pKa = 3.22ATQFDD288 pKa = 4.22SSIQKK293 pKa = 10.16IMIEE297 pKa = 4.09VAFSIIATHH306 pKa = 6.55FDD308 pKa = 3.35RR309 pKa = 11.84KK310 pKa = 10.83AMYY313 pKa = 10.66DD314 pKa = 3.45DD315 pKa = 4.14VNTVGEE321 pKa = 4.18VLEE324 pKa = 4.18LVRR327 pKa = 11.84DD328 pKa = 4.05YY329 pKa = 11.04FIHH332 pKa = 6.16TPIVMPAGEE341 pKa = 4.18KK342 pKa = 10.75AKK344 pKa = 11.14GNVQGVLYY352 pKa = 9.86YY353 pKa = 10.46GKK355 pKa = 10.15KK356 pKa = 9.76HH357 pKa = 5.35GVPSGSYY364 pKa = 7.69FTQLVDD370 pKa = 3.99SIVNIIVLGTLASKK384 pKa = 10.71FGFYY388 pKa = 10.42LSKK391 pKa = 11.36EE392 pKa = 4.3EE393 pKa = 4.26IFVLGDD399 pKa = 3.44DD400 pKa = 4.95LLFFTNTHH408 pKa = 6.57LDD410 pKa = 3.35VKK412 pKa = 10.74KK413 pKa = 10.48PSTSYY418 pKa = 11.18AKK420 pKa = 9.49STFGMLLKK428 pKa = 10.78

Molecular weight: 48.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

428

428

428

428.0

48.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.374 ± 0.0

0.234 ± 0.0

4.907 ± 0.0

6.308 ± 0.0

4.673 ± 0.0

7.009 ± 0.0

1.869 ± 0.0

5.14 ± 0.0

8.645 ± 0.0

9.813 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.804 ± 0.0

3.037 ± 0.0

3.972 ± 0.0

3.505 ± 0.0

4.673 ± 0.0

8.178 ± 0.0

6.308 ± 0.0

7.009 ± 0.0

1.636 ± 0.0

4.907 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski