Desulfoplanes formicivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfoplanes

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2657 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A194AG35|A0A194AG35_9DELT FMN reductase OS=Desulfoplanes formicivorans OX=1592317 GN=DPF_0437 PE=4 SV=1
MM1 pKa = 7.62RR2 pKa = 11.84VIEE5 pKa = 5.18PIDD8 pKa = 3.46IEE10 pKa = 5.51LIDD13 pKa = 4.46SNVTQSGLSEE23 pKa = 3.89WDD25 pKa = 3.17AEE27 pKa = 4.43TIYY30 pKa = 11.05AAGQRR35 pKa = 11.84VVVSYY40 pKa = 11.03EE41 pKa = 3.94EE42 pKa = 5.21DD43 pKa = 3.82GEE45 pKa = 4.56TPRR48 pKa = 11.84VAEE51 pKa = 4.81EE52 pKa = 4.05YY53 pKa = 10.22TSLRR57 pKa = 11.84SDD59 pKa = 2.94NVGFYY64 pKa = 10.54PPDD67 pKa = 3.49SSGDD71 pKa = 3.53GQDD74 pKa = 3.24GVKK77 pKa = 10.2ISVGDD82 pKa = 3.97SEE84 pKa = 5.41DD85 pKa = 3.41VSSFTIGEE93 pKa = 4.46TVGTSLASGTCSFIDD108 pKa = 4.02GTTGGYY114 pKa = 8.97MILSGVSGDD123 pKa = 3.96FDD125 pKa = 4.45SGDD128 pKa = 3.83TISGNDD134 pKa = 3.31SGASATISSVSSTTIAAAWEE154 pKa = 4.17RR155 pKa = 11.84VGATNRR161 pKa = 11.84WKK163 pKa = 10.61MFDD166 pKa = 3.78AYY168 pKa = 11.39VNSQTVADD176 pKa = 5.57DD177 pKa = 3.38IDD179 pKa = 3.77VTIGFGRR186 pKa = 11.84CDD188 pKa = 3.62TLVLLDD194 pKa = 3.77VQATDD199 pKa = 3.67VEE201 pKa = 4.53IEE203 pKa = 4.29VVNDD207 pKa = 3.29STGEE211 pKa = 4.23VVFSEE216 pKa = 4.46AFDD219 pKa = 3.62MRR221 pKa = 11.84LDD223 pKa = 4.32QSASWADD230 pKa = 3.71YY231 pKa = 9.54FFAPAEE237 pKa = 4.35YY238 pKa = 8.09KK239 pKa = 10.23TSLIVSTPLYY249 pKa = 9.28YY250 pKa = 10.39NASARR255 pKa = 11.84IRR257 pKa = 11.84ITNGDD262 pKa = 3.84DD263 pKa = 3.19EE264 pKa = 5.31AMCGHH269 pKa = 6.23VVAGRR274 pKa = 11.84AQYY277 pKa = 10.15IAASQWSPTAGITDD291 pKa = 3.72YY292 pKa = 11.56SSAEE296 pKa = 3.94TDD298 pKa = 3.18TDD300 pKa = 3.76GVTSLEE306 pKa = 3.78QGPWSKK312 pKa = 10.64EE313 pKa = 3.62LSVDD317 pKa = 3.79LLVPTASVSNLQRR330 pKa = 11.84RR331 pKa = 11.84LASYY335 pKa = 10.13RR336 pKa = 11.84GKK338 pKa = 9.96PCVWDD343 pKa = 4.1CNNDD347 pKa = 3.78STDD350 pKa = 3.17HH351 pKa = 7.16DD352 pKa = 4.01ALIVYY357 pKa = 8.86GYY359 pKa = 10.36FSDD362 pKa = 4.49FSIVIAGPTTSSCSLTIQGLII383 pKa = 3.77

Molecular weight: 40.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A194AHT9|A0A194AHT9_9DELT Uncharacterized protein OS=Desulfoplanes formicivorans OX=1592317 GN=DPF_1045 PE=4 SV=1
MM1 pKa = 7.86PKK3 pKa = 10.65LKK5 pKa = 9.79TNKK8 pKa = 9.61SAAKK12 pKa = 10.15RR13 pKa = 11.84FTTTGTGKK21 pKa = 10.25VKK23 pKa = 10.65RR24 pKa = 11.84NRR26 pKa = 11.84SNSQHH31 pKa = 6.67ILTKK35 pKa = 10.63KK36 pKa = 7.69NAKK39 pKa = 9.18RR40 pKa = 11.84KK41 pKa = 9.01RR42 pKa = 11.84RR43 pKa = 11.84LRR45 pKa = 11.84QSTTMDD51 pKa = 3.01KK52 pKa = 10.13STLKK56 pKa = 10.26SVKK59 pKa = 9.98RR60 pKa = 11.84LVPTIFF66 pKa = 3.73

Molecular weight: 7.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2657

0

2657

859764

41

5430

323.6

35.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.662 ± 0.051

1.423 ± 0.021

5.498 ± 0.037

5.819 ± 0.05

4.164 ± 0.031

7.634 ± 0.039

2.435 ± 0.025

6.18 ± 0.05

4.932 ± 0.047

10.49 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.94 ± 0.02

3.222 ± 0.028

4.735 ± 0.036

3.85 ± 0.027

5.896 ± 0.037

5.543 ± 0.037

5.495 ± 0.032

7.122 ± 0.044

1.232 ± 0.02

2.728 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski