Emticicia sp. TH156

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia; unclassified Emticicia

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4502 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N4XDQ6|A0A2N4XDQ6_9BACT RNA polymerase subunit sigma OS=Emticicia sp. TH156 OX=2067454 GN=C0V77_08685 PE=4 SV=1
MM1 pKa = 7.11ITPISFKK8 pKa = 10.81NDD10 pKa = 2.74LSYY13 pKa = 11.26GVSIYY18 pKa = 10.91LSTDD22 pKa = 3.08DD23 pKa = 4.54TNAGQPNYY31 pKa = 9.63IARR34 pKa = 11.84LSFVGHH40 pKa = 6.77IEE42 pKa = 3.88PAATLAISQQSDD54 pKa = 3.46LTSVYY59 pKa = 10.11ICYY62 pKa = 10.39DD63 pKa = 3.54NQNKK67 pKa = 8.48PVKK70 pKa = 10.27RR71 pKa = 11.84MVYY74 pKa = 9.98EE75 pKa = 4.73GGSSQQGFTITQADD89 pKa = 3.69ADD91 pKa = 4.47VIASNYY97 pKa = 10.51SFFAFIAANPNDD109 pKa = 3.94ALSVSFAKK117 pKa = 9.36LTEE120 pKa = 4.69GGNATPDD127 pKa = 3.5QIDD130 pKa = 3.2AFYY133 pKa = 10.62EE134 pKa = 4.42GTANYY139 pKa = 7.83QACTYY144 pKa = 10.41VSYY147 pKa = 11.05ILVLAALSADD157 pKa = 3.76TGTSPADD164 pKa = 3.18TAYY167 pKa = 10.97SLKK170 pKa = 10.99SLVGYY175 pKa = 10.44LGVNWPGLVPDD186 pKa = 4.54FPVRR190 pKa = 11.84SFTCTTLNGNGNLVSLSCDD209 pKa = 2.92VNMEE213 pKa = 4.79DD214 pKa = 5.27IYY216 pKa = 11.19FGSQIAANIFTITPFNSVKK235 pKa = 10.09VVHH238 pKa = 5.95VNISFSYY245 pKa = 9.88TLTPDD250 pKa = 3.56LVTVDD255 pKa = 3.89LTFSLDD261 pKa = 3.58AIRR264 pKa = 11.84IPVAANTDD272 pKa = 3.21ITLSNPAITFSLSPQSGEE290 pKa = 3.9VSFMAQATIPFKK302 pKa = 10.75LWSNPTFYY310 pKa = 11.32ADD312 pKa = 3.17LSMVIGADD320 pKa = 3.21QANIGVVIRR329 pKa = 11.84GDD331 pKa = 3.33NSVLFTPPIIQGVHH345 pKa = 4.4FTSFGVGMGVFFQPIIGYY363 pKa = 8.65SLGVQGSFTIGKK375 pKa = 9.03PEE377 pKa = 4.6DD378 pKa = 3.63NVLVEE383 pKa = 4.91DD384 pKa = 3.61NSFAVVCALIGDD396 pKa = 4.57IPNPLYY402 pKa = 10.36ISFYY406 pKa = 10.49VSQISLNEE414 pKa = 3.85LVTIFTDD421 pKa = 2.95VDD423 pKa = 4.1FNIDD427 pKa = 3.52FPVSVKK433 pKa = 10.52NLSFVWQEE441 pKa = 3.84NPTQPVVLPDD451 pKa = 3.89GSTSKK456 pKa = 11.47YY457 pKa = 9.18EE458 pKa = 4.14FGFSGYY464 pKa = 10.8LDD466 pKa = 3.61FFGLGFYY473 pKa = 11.01GDD475 pKa = 4.88LDD477 pKa = 4.01INPVSGVNGIITMSPYY493 pKa = 10.8EE494 pKa = 4.68LGPLSLKK501 pKa = 11.04GNGQAISIKK510 pKa = 10.32VNEE513 pKa = 4.69AGDD516 pKa = 4.42PISNNVVPEE525 pKa = 4.31TSAEE529 pKa = 3.85EE530 pKa = 3.83LAIEE534 pKa = 4.16NAGTQVIIQAGGPVMEE550 pKa = 4.56VSTFEE555 pKa = 3.84SPYY558 pKa = 9.64FVASIAIAFLDD569 pKa = 3.75CRR571 pKa = 11.84QSVEE575 pKa = 4.41ASVTNNGFSFEE586 pKa = 4.76LDD588 pKa = 3.64FEE590 pKa = 4.54ATLTSSMACVLKK602 pKa = 10.61NYY604 pKa = 10.13QYY606 pKa = 11.19FSGSFTYY613 pKa = 10.44GADD616 pKa = 3.3LMIRR620 pKa = 11.84IPDD623 pKa = 3.67SVDD626 pKa = 3.0VFNLGSIHH634 pKa = 6.24FVSTISSEE642 pKa = 4.17LTIDD646 pKa = 3.75TSADD650 pKa = 3.57VIRR653 pKa = 11.84FTYY656 pKa = 10.42AGSFDD661 pKa = 3.49FAGYY665 pKa = 9.72HH666 pKa = 4.15YY667 pKa = 9.96HH668 pKa = 7.53IPEE671 pKa = 4.71LSLDD675 pKa = 3.59INTQSLQDD683 pKa = 4.01IINTANQWIIDD694 pKa = 3.9NVSTLFKK701 pKa = 10.77NLYY704 pKa = 10.35ADD706 pKa = 3.48ATAWINAITQGVIVLATNTAQYY728 pKa = 10.34VIEE731 pKa = 4.44GFKK734 pKa = 10.67VVYY737 pKa = 9.77GVSAEE742 pKa = 4.11AVGDD746 pKa = 3.86LLKK749 pKa = 10.3GTNYY753 pKa = 10.96ALNDD757 pKa = 3.39VAKK760 pKa = 10.58GMKK763 pKa = 9.58DD764 pKa = 3.29VYY766 pKa = 10.92NATSTLTTQTLVTAYY781 pKa = 10.54NAAEE785 pKa = 4.4DD786 pKa = 3.82SAAAALQYY794 pKa = 11.11AGYY797 pKa = 7.64TADD800 pKa = 4.62EE801 pKa = 4.32IADD804 pKa = 3.74ALVNVYY810 pKa = 10.12GSTMEE815 pKa = 4.07VVGEE819 pKa = 3.82ILLALGYY826 pKa = 10.1SADD829 pKa = 3.66VVAQALTDD837 pKa = 3.59AFNATEE843 pKa = 4.27AEE845 pKa = 4.56VAAVMAEE852 pKa = 4.17LGYY855 pKa = 11.02AIDD858 pKa = 3.77TAGNWVEE865 pKa = 4.41KK866 pKa = 8.29TAKK869 pKa = 10.24DD870 pKa = 3.61AADD873 pKa = 3.59ATKK876 pKa = 10.77NAADD880 pKa = 4.53DD881 pKa = 4.25ALKK884 pKa = 10.56QATDD888 pKa = 3.53STKK891 pKa = 10.95DD892 pKa = 3.37ATDD895 pKa = 3.36SAIKK899 pKa = 8.92EE900 pKa = 4.48TEE902 pKa = 4.06DD903 pKa = 3.5AAKK906 pKa = 10.53DD907 pKa = 3.47AADD910 pKa = 3.93EE911 pKa = 4.33AEE913 pKa = 4.54KK914 pKa = 10.54AAKK917 pKa = 9.99DD918 pKa = 3.4AADD921 pKa = 3.82AAKK924 pKa = 10.49DD925 pKa = 3.62AADD928 pKa = 3.78SALKK932 pKa = 10.56ASEE935 pKa = 4.74DD936 pKa = 3.79AAKK939 pKa = 10.57DD940 pKa = 3.35AADD943 pKa = 3.86AAKK946 pKa = 10.55DD947 pKa = 3.67AADD950 pKa = 4.01EE951 pKa = 4.07AAKK954 pKa = 10.15AAKK957 pKa = 9.96DD958 pKa = 3.34AADD961 pKa = 3.65AAKK964 pKa = 10.53NATDD968 pKa = 3.57SAKK971 pKa = 10.68NATDD975 pKa = 3.53SALKK979 pKa = 10.31SAADD983 pKa = 4.18AIIPP987 pKa = 3.89

Molecular weight: 104.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N4X6Q9|A0A2N4X6Q9_9BACT TIR domain-containing protein OS=Emticicia sp. TH156 OX=2067454 GN=C0V77_22715 PE=4 SV=1
MM1 pKa = 7.92RR2 pKa = 11.84ILRR5 pKa = 11.84FTLFFFIAGLLIAPQVQATHH25 pKa = 6.19LRR27 pKa = 11.84AGEE30 pKa = 3.92ITAKK34 pKa = 10.22RR35 pKa = 11.84ISSTTLTYY43 pKa = 10.55RR44 pKa = 11.84VTLTTYY50 pKa = 9.08TDD52 pKa = 3.46QINGYY57 pKa = 8.6IANDD61 pKa = 3.62AANTSQFSFGVTGVPLFEE79 pKa = 4.15VKK81 pKa = 9.8RR82 pKa = 11.84RR83 pKa = 11.84KK84 pKa = 9.91KK85 pKa = 10.62FLINSS90 pKa = 3.94

Molecular weight: 10.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4502

0

4502

1548216

25

2417

343.9

38.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.435 ± 0.037

0.775 ± 0.011

5.155 ± 0.024

6.077 ± 0.041

5.089 ± 0.032

6.764 ± 0.035

1.791 ± 0.017

7.226 ± 0.035

7.186 ± 0.032

9.508 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.338 ± 0.018

5.51 ± 0.032

3.866 ± 0.021

3.726 ± 0.023

4.149 ± 0.024

6.108 ± 0.025

5.655 ± 0.026

6.377 ± 0.026

1.225 ± 0.015

4.041 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski