Dinoponera quadriceps (South American ant)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae;

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17673 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6P3YH17|A0A6P3YH17_DINQU homer protein homolog 2-like OS=Dinoponera quadriceps OX=609295 GN=LOC106752136 PE=4 SV=1
MM1 pKa = 7.11VVLSNFLTPQEE12 pKa = 4.6GIRR15 pKa = 11.84HH16 pKa = 5.62EE17 pKa = 4.32EE18 pKa = 3.96QNTTVYY24 pKa = 10.76INDD27 pKa = 3.7RR28 pKa = 11.84EE29 pKa = 4.35VGKK32 pKa = 8.78GTFYY36 pKa = 9.91ITEE39 pKa = 4.36SVLSWVNSDD48 pKa = 3.51TQQGFSLEE56 pKa = 4.16YY57 pKa = 10.02PHH59 pKa = 7.27ISLHH63 pKa = 6.32AISRR67 pKa = 11.84DD68 pKa = 3.7EE69 pKa = 3.97QVHH72 pKa = 5.92PRR74 pKa = 11.84QCLYY78 pKa = 11.52VMVDD82 pKa = 3.56GKK84 pKa = 11.37VDD86 pKa = 4.07LPDD89 pKa = 3.53MPLPLSPDD97 pKa = 3.18NGSEE101 pKa = 4.29NEE103 pKa = 4.72DD104 pKa = 4.13DD105 pKa = 6.19DD106 pKa = 6.56GDD108 pKa = 4.1TPITEE113 pKa = 4.07MRR115 pKa = 11.84FAPDD119 pKa = 3.05NTNNLEE125 pKa = 4.9LMFQAMNACQALHH138 pKa = 7.51PDD140 pKa = 3.96PQDD143 pKa = 3.33SFSDD147 pKa = 3.31EE148 pKa = 5.23DD149 pKa = 3.62IYY151 pKa = 11.56EE152 pKa = 4.56DD153 pKa = 3.43AAEE156 pKa = 4.96DD157 pKa = 3.49YY158 pKa = 11.34GEE160 pKa = 4.04YY161 pKa = 10.26SEE163 pKa = 5.55EE164 pKa = 4.17VGAGDD169 pKa = 4.62APYY172 pKa = 10.4ILPTEE177 pKa = 4.13QMGASHH183 pKa = 6.78NGSEE187 pKa = 4.58AEE189 pKa = 3.84EE190 pKa = 4.32AMDD193 pKa = 3.75VEE195 pKa = 4.86AGQFEE200 pKa = 4.57DD201 pKa = 5.56AEE203 pKa = 4.32EE204 pKa = 4.4DD205 pKa = 3.54PP206 pKa = 5.23

Molecular weight: 22.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6P3XQ50|A0A6P3XQ50_DINQU zinc finger protein 346-like OS=Dinoponera quadriceps OX=609295 GN=LOC106747538 PE=4 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84KK3 pKa = 9.89CGVEE7 pKa = 3.87KK8 pKa = 9.09PTDD11 pKa = 3.51VTIEE15 pKa = 4.04CSSRR19 pKa = 11.84PRR21 pKa = 11.84VNHH24 pKa = 6.49FDD26 pKa = 3.21RR27 pKa = 11.84TALVQRR33 pKa = 11.84CDD35 pKa = 3.68FRR37 pKa = 11.84SHH39 pKa = 5.71VLSTSRR45 pKa = 11.84DD46 pKa = 3.71PIRR49 pKa = 11.84NSSNRR54 pKa = 11.84QLRR57 pKa = 11.84SRR59 pKa = 11.84NGEE62 pKa = 3.76ITSSGDD68 pKa = 3.0HH69 pKa = 6.24TNPLFSVSDD78 pKa = 3.45AGQRR82 pKa = 11.84PTWSLPLSRR91 pKa = 11.84YY92 pKa = 8.92GSPFPRR98 pKa = 11.84GPSSSLDD105 pKa = 3.44PLLPFPPGEE114 pKa = 4.25SARR117 pKa = 11.84SRR119 pKa = 11.84IFIPITEE126 pKa = 4.46PDD128 pKa = 3.19SRR130 pKa = 11.84SCFRR134 pKa = 11.84CCRR137 pKa = 11.84RR138 pKa = 11.84SPPEE142 pKa = 3.74RR143 pKa = 11.84LVLCGSTALFLNHH156 pKa = 6.54SPTCAVCHH164 pKa = 6.26DD165 pKa = 4.13VGPPRR170 pKa = 11.84LLLSLSRR177 pKa = 11.84FKK179 pKa = 10.82PSTVIRR185 pKa = 11.84DD186 pKa = 3.83DD187 pKa = 4.65DD188 pKa = 4.04NGASSGQEE196 pKa = 2.84RR197 pKa = 11.84RR198 pKa = 11.84TEE200 pKa = 3.82MEE202 pKa = 3.74RR203 pKa = 11.84KK204 pKa = 9.33VKK206 pKa = 10.21IEE208 pKa = 3.97RR209 pKa = 11.84EE210 pKa = 4.01VHH212 pKa = 5.41HH213 pKa = 6.48VGKK216 pKa = 10.41IAGTKK221 pKa = 9.1ARR223 pKa = 11.84YY224 pKa = 8.92VLAVSVNKK232 pKa = 10.54LKK234 pKa = 10.89RR235 pKa = 11.84HH236 pKa = 5.48FAYY239 pKa = 10.33ASAQHH244 pKa = 6.15KK245 pKa = 9.59RR246 pKa = 11.84RR247 pKa = 11.84KK248 pKa = 7.73TRR250 pKa = 11.84ALTHH254 pKa = 6.32RR255 pKa = 11.84PARR258 pKa = 11.84SYY260 pKa = 9.6TQLNARR266 pKa = 11.84TYY268 pKa = 8.6AHH270 pKa = 6.5TRR272 pKa = 11.84NKK274 pKa = 10.05HH275 pKa = 5.15AGATIDD281 pKa = 3.54FTVCLRR287 pKa = 11.84SLSLSLSLFSFLFEE301 pKa = 4.04EE302 pKa = 4.64LHH304 pKa = 5.8AHH306 pKa = 6.48GARR309 pKa = 11.84FF310 pKa = 3.27

Molecular weight: 34.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11037

6636

17673

12470770

9

16744

705.6

79.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.824 ± 0.025

1.863 ± 0.019

5.625 ± 0.016

6.974 ± 0.032

3.249 ± 0.015

5.659 ± 0.021

2.519 ± 0.01

5.133 ± 0.015

6.038 ± 0.028

8.88 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.29 ± 0.009

4.646 ± 0.015

5.324 ± 0.024

4.492 ± 0.02

6.018 ± 0.02

8.358 ± 0.023

6.0 ± 0.015

6.172 ± 0.014

1.025 ± 0.007

2.911 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski