Salinicoccus alkaliphilus DSM 16010

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Salinicoccus; Salinicoccus alkaliphilus

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2512 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M7HGP6|A0A1M7HGP6_9STAP Uncharacterized protein OS=Salinicoccus alkaliphilus DSM 16010 OX=1123231 GN=SAMN02745189_01859 PE=4 SV=1
MM1 pKa = 7.6KK2 pKa = 10.2KK3 pKa = 10.49YY4 pKa = 10.75LILVLSLVFVLAACTDD20 pKa = 3.74DD21 pKa = 5.31GEE23 pKa = 4.36VDD25 pKa = 3.25EE26 pKa = 4.88ATEE29 pKa = 4.1EE30 pKa = 4.21EE31 pKa = 4.64ATGEE35 pKa = 4.04DD36 pKa = 3.67AAEE39 pKa = 4.36EE40 pKa = 4.8GSTGGSEE47 pKa = 4.14GTINMSLLATPNSLDD62 pKa = 3.18PHH64 pKa = 6.75AANDD68 pKa = 3.63QPSNHH73 pKa = 5.51VNVNIYY79 pKa = 9.9EE80 pKa = 4.19RR81 pKa = 11.84LVEE84 pKa = 4.3FTPEE88 pKa = 3.95LEE90 pKa = 4.45LEE92 pKa = 4.58PGLAEE97 pKa = 4.44SYY99 pKa = 10.5EE100 pKa = 4.15QVEE103 pKa = 4.35DD104 pKa = 3.98TTWEE108 pKa = 3.8FSIRR112 pKa = 11.84EE113 pKa = 4.16GVSFHH118 pKa = 7.68DD119 pKa = 4.24GEE121 pKa = 4.34EE122 pKa = 4.21LNAEE126 pKa = 4.0AVKK129 pKa = 11.03ANLDD133 pKa = 3.53RR134 pKa = 11.84VTDD137 pKa = 3.83EE138 pKa = 5.32DD139 pKa = 3.79VGSPVAFLFEE149 pKa = 5.19LIEE152 pKa = 4.12EE153 pKa = 4.45VEE155 pKa = 4.51VIDD158 pKa = 5.63DD159 pKa = 4.04YY160 pKa = 11.32TVHH163 pKa = 6.38IHH165 pKa = 5.78TSSPFAALPSHH176 pKa = 6.99LAHH179 pKa = 7.24PAGGMISPAVIEE191 pKa = 3.89EE192 pKa = 4.75DD193 pKa = 3.84YY194 pKa = 11.8AEE196 pKa = 5.04DD197 pKa = 3.71EE198 pKa = 4.34QLTAVHH204 pKa = 5.94QNPVGTGAYY213 pKa = 8.83QFEE216 pKa = 4.91EE217 pKa = 4.42ISEE220 pKa = 4.18GDD222 pKa = 3.73YY223 pKa = 10.0VTLVKK228 pKa = 10.87NEE230 pKa = 4.25EE231 pKa = 4.22YY232 pKa = 9.71WGEE235 pKa = 3.93EE236 pKa = 3.95AEE238 pKa = 4.29SDD240 pKa = 3.85VFTFNAVPEE249 pKa = 4.44DD250 pKa = 3.42ATRR253 pKa = 11.84IAEE256 pKa = 4.17LQTRR260 pKa = 11.84HH261 pKa = 6.38ADD263 pKa = 3.99LIFPLDD269 pKa = 4.02PNDD272 pKa = 3.78FEE274 pKa = 5.63QINSDD279 pKa = 2.94EE280 pKa = 4.17GTTVNEE286 pKa = 4.3TEE288 pKa = 4.51SVRR291 pKa = 11.84MEE293 pKa = 3.64YY294 pKa = 10.69VGFNVEE300 pKa = 4.59VEE302 pKa = 4.31PFDD305 pKa = 5.19DD306 pKa = 3.96PVVRR310 pKa = 11.84QAIAHH315 pKa = 6.97AIDD318 pKa = 4.37KK319 pKa = 10.62EE320 pKa = 4.32DD321 pKa = 4.4IINIMLEE328 pKa = 4.07GKK330 pKa = 10.29AVVADD335 pKa = 4.11TLLSPAVFGHH345 pKa = 6.97AEE347 pKa = 4.49DD348 pKa = 4.19IDD350 pKa = 4.83GIGYY354 pKa = 9.75DD355 pKa = 4.23LEE357 pKa = 4.56TAQEE361 pKa = 4.07LLDD364 pKa = 4.31DD365 pKa = 4.31NGYY368 pKa = 10.76EE369 pKa = 4.06EE370 pKa = 5.3GFSAEE375 pKa = 4.02IVVQDD380 pKa = 3.88RR381 pKa = 11.84TAADD385 pKa = 2.99IATYY389 pKa = 9.92IQEE392 pKa = 4.21QLQEE396 pKa = 4.19LNIDD400 pKa = 3.72LEE402 pKa = 4.74IYY404 pKa = 10.56QIDD407 pKa = 3.51PGAYY411 pKa = 8.92LDD413 pKa = 4.05YY414 pKa = 10.83VGSGSHH420 pKa = 7.19DD421 pKa = 3.49MFIGGWGTVTMDD433 pKa = 4.33ADD435 pKa = 3.67YY436 pKa = 11.45GLYY439 pKa = 10.09PLFHH443 pKa = 7.18SSGIGNSGNRR453 pKa = 11.84SRR455 pKa = 11.84YY456 pKa = 9.66ANEE459 pKa = 3.89EE460 pKa = 3.78VDD462 pKa = 4.05TLLEE466 pKa = 4.17DD467 pKa = 4.06ARR469 pKa = 11.84TEE471 pKa = 3.74TDD473 pKa = 2.98EE474 pKa = 4.21AQRR477 pKa = 11.84LALYY481 pKa = 10.36EE482 pKa = 4.02EE483 pKa = 4.31AQEE486 pKa = 4.29IIIAEE491 pKa = 4.01APIIPIYY498 pKa = 10.39HH499 pKa = 7.35PYY501 pKa = 10.79LLTGMSEE508 pKa = 4.95DD509 pKa = 3.17IDD511 pKa = 5.17GYY513 pKa = 9.97AQHH516 pKa = 7.11PASFHH521 pKa = 5.79FLSDD525 pKa = 3.43VSKK528 pKa = 10.69EE529 pKa = 3.94

Molecular weight: 58.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7GJP9|A0A1M7GJP9_9STAP Uncharacterized protein OS=Salinicoccus alkaliphilus DSM 16010 OX=1123231 GN=SAMN02745189_01663 PE=4 SV=1
MM1 pKa = 7.62TKK3 pKa = 9.09RR4 pKa = 11.84TYY6 pKa = 10.29QPNKK10 pKa = 8.16RR11 pKa = 11.84KK12 pKa = 9.54HH13 pKa = 5.99SKK15 pKa = 8.87VHH17 pKa = 5.77GFRR20 pKa = 11.84KK21 pKa = 10.02RR22 pKa = 11.84MSTKK26 pKa = 10.06NGRR29 pKa = 11.84KK30 pKa = 8.47ILARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.09GRR40 pKa = 11.84KK41 pKa = 8.7VLSAA45 pKa = 4.05

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2512

0

2512

753143

40

1488

299.8

33.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.3 ± 0.052

0.523 ± 0.011

6.241 ± 0.051

8.244 ± 0.073

4.461 ± 0.044

7.406 ± 0.05

2.313 ± 0.028

7.688 ± 0.053

5.739 ± 0.051

9.258 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.134 ± 0.024

4.139 ± 0.033

3.502 ± 0.026

2.851 ± 0.027

4.426 ± 0.042

5.762 ± 0.03

5.44 ± 0.027

7.177 ± 0.036

0.804 ± 0.015

3.592 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski