Arthrobacter phage Sonali

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sonalivirus; Arthrobacter virus Sonali

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 99 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A411CQI8|A0A411CQI8_9CAUD Uncharacterized protein OS=Arthrobacter phage Sonali OX=2510495 GN=72 PE=4 SV=1
MM1 pKa = 7.73SIQSAPYY8 pKa = 8.5YY9 pKa = 9.9WYY11 pKa = 9.95EE12 pKa = 4.26CDD14 pKa = 4.28QEE16 pKa = 4.3EE17 pKa = 4.69CGRR20 pKa = 11.84KK21 pKa = 8.03STEE24 pKa = 3.96GSDD27 pKa = 3.28YY28 pKa = 11.36AAWSDD33 pKa = 4.32KK34 pKa = 11.21DD35 pKa = 4.14GAWVEE40 pKa = 4.38ADD42 pKa = 3.19CSDD45 pKa = 3.66WIEE48 pKa = 4.19VEE50 pKa = 4.19GKK52 pKa = 9.88HH53 pKa = 5.81YY54 pKa = 10.33CHH56 pKa = 6.05QHH58 pKa = 4.87AHH60 pKa = 5.72LHH62 pKa = 6.83DD63 pKa = 5.91PDD65 pKa = 4.08TQDD68 pKa = 3.34EE69 pKa = 4.57EE70 pKa = 5.12EE71 pKa = 4.71EE72 pKa = 4.01EE73 pKa = 4.66SPTHH77 pKa = 6.65KK78 pKa = 10.78VV79 pKa = 2.95

Molecular weight: 9.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A411CQR5|A0A411CQR5_9CAUD Major capsid protein OS=Arthrobacter phage Sonali OX=2510495 GN=7 PE=4 SV=1
MM1 pKa = 7.41VITYY5 pKa = 9.88KK6 pKa = 9.97RR7 pKa = 11.84TGTRR11 pKa = 11.84TRR13 pKa = 11.84VTRR16 pKa = 11.84DD17 pKa = 2.88GALLGWIDD25 pKa = 3.75RR26 pKa = 11.84RR27 pKa = 11.84LGSDD31 pKa = 3.35SSPRR35 pKa = 11.84GGAYY39 pKa = 8.2RR40 pKa = 11.84TFHH43 pKa = 6.89HH44 pKa = 7.51PITPTGEE51 pKa = 3.86RR52 pKa = 11.84LAPCWSRR59 pKa = 11.84KK60 pKa = 7.57EE61 pKa = 3.98AVEE64 pKa = 4.05DD65 pKa = 4.11LARR68 pKa = 11.84QADD71 pKa = 3.99KK72 pKa = 11.54NN73 pKa = 3.84

Molecular weight: 8.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

99

0

99

19167

49

1537

193.6

20.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.257 ± 0.753

0.757 ± 0.107

5.703 ± 0.32

5.796 ± 0.437

2.755 ± 0.138

8.165 ± 0.326

2.03 ± 0.221

4.341 ± 0.168

4.221 ± 0.326

8.029 ± 0.246

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.056 ± 0.116

3.177 ± 0.187

6.104 ± 0.402

3.913 ± 0.19

5.656 ± 0.328

5.603 ± 0.255

7.096 ± 0.353

7.346 ± 0.228

1.675 ± 0.141

2.322 ± 0.143
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski