Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Acidobacterium; Acidobacterium capsulatum

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3363 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C1F943|C1F943_ACIC5 Beta-glucosidase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) OX=240015 GN=ACP_2108 PE=3 SV=1
MM1 pKa = 7.23LTCSQDD7 pKa = 3.46SPSSLLSFFKK17 pKa = 10.77ARR19 pKa = 11.84SAPSRR24 pKa = 11.84LLLVALCSLGLVLAGCSGGSSSSGSSSTSGTAPGGGSGSGGGSNNTPTPGAANSVQLGTATVFDD88 pKa = 4.67GPNPEE93 pKa = 4.27PAQIAADD100 pKa = 3.61ASGDD104 pKa = 3.79DD105 pKa = 3.69TLAWTDD111 pKa = 3.25PSGQVYY117 pKa = 9.47VSRR120 pKa = 11.84LAAGSTSWTTPVALIPATSTLKK142 pKa = 10.52AHH144 pKa = 6.89GGITFAASDD153 pKa = 3.51ASGNTTVLFQASDD166 pKa = 3.42ASFQSYY172 pKa = 9.47LVASTLLAGSSKK184 pKa = 9.7WSQPATLSIPDD195 pKa = 3.83ASGSAATLMSNGDD208 pKa = 2.8IAAAYY213 pKa = 9.37GGSLTDD219 pKa = 3.63SVQVATFAPQTQSWGAPVTAAQSPTLLGNFTITSTPQNALTVLWTANIVPNNDD272 pKa = 3.47PSQQSASGVYY282 pKa = 9.85AATASGSAGPFSTPVEE298 pKa = 4.01IDD300 pKa = 3.49VQPGGTAPGIVTSLPDD316 pKa = 3.53AVTDD320 pKa = 3.65TSGNTTAIWTASPQAGGATDD340 pKa = 5.18LYY342 pKa = 11.03ASRR345 pKa = 11.84LAAGSSTWSKK355 pKa = 10.36PVQLDD360 pKa = 3.59TSSSNNPYY368 pKa = 10.65VGFPTPLVVDD378 pKa = 3.96AQGNVTVAWIAGINSPRR395 pKa = 11.84TVQAVRR401 pKa = 11.84YY402 pKa = 8.12DD403 pKa = 3.34ASTSQWSTPSLVQTLPSGTVAGIPALAIGPTQGEE437 pKa = 4.18VSVFWNQPPSASSSGSNGDD456 pKa = 3.02IYY458 pKa = 11.15QSIWSSGSGSWGNPIQADD476 pKa = 4.21LPLPTAGASAATFPVAAVNGSSSMAVAWGDD506 pKa = 3.5PVTGSNSSYY515 pKa = 10.19TLYY518 pKa = 11.37ANVLQQ523 pKa = 4.54

Molecular weight: 51.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C1F1H2|C1F1H2_ACIC5 Glucose-6-phosphate 1-dehydrogenase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) OX=240015 GN=zwf1 PE=3 SV=1
MM1 pKa = 7.7ALTRR5 pKa = 11.84HH6 pKa = 5.36ILLRR10 pKa = 11.84NGAFALVGTAVIPAFLTRR28 pKa = 11.84TLHH31 pKa = 5.83AQTAAARR38 pKa = 11.84AWQGAGGGVSARR50 pKa = 11.84RR51 pKa = 11.84GPSRR55 pKa = 3.71

Molecular weight: 5.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3363

0

3363

1183035

30

3102

351.8

38.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.3 ± 0.054

0.905 ± 0.013

4.752 ± 0.027

5.591 ± 0.047

3.775 ± 0.029

7.904 ± 0.043

2.588 ± 0.021

4.855 ± 0.029

3.389 ± 0.032

10.18 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.37 ± 0.021

3.222 ± 0.04

5.439 ± 0.034

4.25 ± 0.033

6.533 ± 0.044

6.09 ± 0.044

5.62 ± 0.041

7.019 ± 0.032

1.406 ± 0.019

2.811 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski