Corticimicrobacter populi

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Corticimicrobacter

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3237 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V1JXE6|A0A2V1JXE6_9BURK Metal ABC transporter substrate-binding protein OS=Corticimicrobacter populi OX=2175229 GN=DD235_13970 PE=3 SV=1
MM1 pKa = 7.13WCVPRR6 pKa = 11.84YY7 pKa = 9.23LVQSTEE13 pKa = 4.2DD14 pKa = 3.7GSFLAADD21 pKa = 4.07GEE23 pKa = 4.72GGVINVMALTAADD36 pKa = 4.06PFQEE40 pKa = 4.34PEE42 pKa = 4.13SAVEE46 pKa = 3.9AVQDD50 pKa = 3.78HH51 pKa = 6.77LDD53 pKa = 3.45GRR55 pKa = 11.84GVVILIYY62 pKa = 10.19VPCIQAA68 pKa = 3.48

Molecular weight: 7.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V1JYB7|A0A2V1JYB7_9BURK Flg_hook domain-containing protein OS=Corticimicrobacter populi OX=2175229 GN=DD235_15245 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 8.99TRR25 pKa = 11.84AGRR28 pKa = 11.84AVLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.92GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3237

0

3237

1076608

34

3991

332.6

36.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.944 ± 0.054

0.923 ± 0.014

5.524 ± 0.039

5.268 ± 0.042

3.38 ± 0.027

8.073 ± 0.046

2.354 ± 0.024

4.943 ± 0.036

2.563 ± 0.032

11.231 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.474 ± 0.024

2.636 ± 0.03

5.025 ± 0.036

4.611 ± 0.038

7.129 ± 0.042

5.579 ± 0.031

5.217 ± 0.03

7.19 ± 0.037

1.522 ± 0.021

2.416 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski