Garlic common latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 7.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9CHA4|G9CHA4_9VIRU Movement protein TGB2 OS=Garlic common latent virus OX=47900 GN=TGB-2 PE=3 SV=1
MM1 pKa = 7.81DD2 pKa = 3.76VLVNKK7 pKa = 10.01LLSFDD12 pKa = 4.12FVRR15 pKa = 11.84VSSKK19 pKa = 10.3LSKK22 pKa = 10.25PIIVNCVPGAGKK34 pKa = 9.64SHH36 pKa = 8.22LIRR39 pKa = 11.84EE40 pKa = 4.63LLRR43 pKa = 11.84EE44 pKa = 4.07DD45 pKa = 3.84EE46 pKa = 4.63RR47 pKa = 11.84FVAYY51 pKa = 9.31TFGADD56 pKa = 2.91ITEE59 pKa = 4.31TTDD62 pKa = 3.65CITIQRR68 pKa = 11.84VPEE71 pKa = 4.18AKK73 pKa = 9.7PIHH76 pKa = 6.05NFIIIDD82 pKa = 4.28EE83 pKa = 4.36YY84 pKa = 11.66QLGDD88 pKa = 3.21WRR90 pKa = 11.84SFEE93 pKa = 4.83PIAIFGDD100 pKa = 3.82PLQGSSEE107 pKa = 4.22CLRR110 pKa = 11.84PHH112 pKa = 6.65FTTDD116 pKa = 2.69LTKK119 pKa = 10.61RR120 pKa = 11.84FGSSTCSLLQSIGYY134 pKa = 7.79QIRR137 pKa = 11.84SEE139 pKa = 4.06RR140 pKa = 11.84TDD142 pKa = 2.64ICIIAEE148 pKa = 4.17VTSAEE153 pKa = 4.12LEE155 pKa = 4.38GVVIAYY161 pKa = 9.76GPEE164 pKa = 4.08AEE166 pKa = 5.38WLLKK170 pKa = 9.95WYY172 pKa = 9.81GVSHH176 pKa = 6.73LRR178 pKa = 11.84VCEE181 pKa = 4.03IQGKK185 pKa = 7.07TFDD188 pKa = 3.81VVTLVTDD195 pKa = 3.52YY196 pKa = 11.58SIVTEE201 pKa = 4.2DD202 pKa = 3.45NRR204 pKa = 11.84RR205 pKa = 11.84DD206 pKa = 3.39LYY208 pKa = 11.45LCLTRR213 pKa = 11.84HH214 pKa = 5.61RR215 pKa = 11.84NKK217 pKa = 10.73LQVLNGDD224 pKa = 3.56ATLATSS230 pKa = 3.8

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9CHA7|G9CHA7_9VIRU Nucleic acid binding protein OS=Garlic common latent virus OX=47900 PE=4 SV=1
MM1 pKa = 8.13DD2 pKa = 4.64PTTQISVSLLLVVKK16 pKa = 10.88NKK18 pKa = 10.39LCDD21 pKa = 3.43SGVPTDD27 pKa = 3.58VAIGIIEE34 pKa = 4.44PIIKK38 pKa = 9.78EE39 pKa = 3.89VRR41 pKa = 11.84KK42 pKa = 9.13LQRR45 pKa = 11.84QEE47 pKa = 3.69EE48 pKa = 4.17QRR50 pKa = 11.84LLRR53 pKa = 11.84FNGCSRR59 pKa = 11.84SAIKK63 pKa = 10.36RR64 pKa = 11.84RR65 pKa = 11.84AKK67 pKa = 10.42YY68 pKa = 10.34LNKK71 pKa = 9.82CHH73 pKa = 6.92KK74 pKa = 10.0CGKK77 pKa = 8.32QSHH80 pKa = 6.44YY81 pKa = 10.73GLCSRR86 pKa = 11.84NQTISNMEE94 pKa = 3.76VEE96 pKa = 4.22FLIRR100 pKa = 11.84CGTIRR105 pKa = 11.84YY106 pKa = 7.6LTEE109 pKa = 3.65NPQRR113 pKa = 11.84RR114 pKa = 11.84KK115 pKa = 10.77DD116 pKa = 3.64SIYY119 pKa = 10.66SSDD122 pKa = 3.68YY123 pKa = 9.67EE124 pKa = 4.28KK125 pKa = 10.88LVEE128 pKa = 4.05RR129 pKa = 11.84ATRR132 pKa = 11.84VV133 pKa = 3.05

Molecular weight: 15.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2809

68

1951

468.2

52.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.44 ± 1.387

3.133 ± 0.44

5.055 ± 0.556

6.408 ± 0.72

5.838 ± 1.285

6.159 ± 0.407

2.421 ± 0.442

5.269 ± 1.144

5.269 ± 0.475

9.932 ± 0.966

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.851 ± 0.287

3.489 ± 0.633

4.058 ± 0.474

3.133 ± 0.451

6.515 ± 0.776

7.227 ± 0.59

6.016 ± 0.928

6.764 ± 0.337

0.926 ± 0.189

3.097 ± 0.229
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski