Neokomagataea tanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Neokomagataea

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2177 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6V7D6|A0A4Y6V7D6_9PROT Uncharacterized protein OS=Neokomagataea tanensis OX=661191 GN=D5366_01990 PE=4 SV=1
MM1 pKa = 7.51AVVTVHH7 pKa = 5.76GTTARR12 pKa = 11.84TLAVTVDD19 pKa = 3.77GARR22 pKa = 11.84AQALANQYY30 pKa = 11.29ASGINSQFGANSSSVIDD47 pKa = 3.98LVAGTVSSGSYY58 pKa = 9.13GHH60 pKa = 6.64GAISEE65 pKa = 4.19GGNYY69 pKa = 10.13SIGGSLSNITVGAYY83 pKa = 10.11DD84 pKa = 4.57VVDD87 pKa = 3.76TLNAAVSIDD96 pKa = 3.87LTQSTASGVSIIAGDD111 pKa = 3.57WAGVTVNPGSQSGIFVGGVGNNLFAGSQASGNWNIATGSGNDD153 pKa = 4.26TINATNGNNTIAGGTGYY170 pKa = 11.29NLITVGSGTNSVLSEE185 pKa = 4.17GQDD188 pKa = 3.69TIRR191 pKa = 11.84GTSGTNTVTLLGGSSLVSLGANSTIIDD218 pKa = 3.96GAQDD222 pKa = 3.52NNVSFGTNSYY232 pKa = 8.09VTAGSASSYY241 pKa = 10.42FSTGSISTVVGGLNDD256 pKa = 4.29TISATGNLQVVRR268 pKa = 11.84GSTNNISVSGALSFLNGTGSTTITAGTSTIFGATALNAQLVGSGTSLFVGNDD320 pKa = 3.12GGEE323 pKa = 4.44TVSGASYY330 pKa = 10.02TGVLHH335 pKa = 7.16AFAGTGNDD343 pKa = 4.06SITGGTGADD352 pKa = 3.45TLVGGTGNATLTGGTGAANLFALNKK377 pKa = 10.02GSAGGNYY384 pKa = 9.21TIEE387 pKa = 4.75DD388 pKa = 3.89FGSAAGNLMALYY400 pKa = 10.25QYY402 pKa = 11.28GLQNNNGLQSVLQNATVAGGNTTIQLSDD430 pKa = 3.07NSKK433 pKa = 8.04ITFVGVTNLKK443 pKa = 10.43ASNFTLSS450 pKa = 3.04

Molecular weight: 43.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6VBQ6|A0A4Y6VBQ6_9PROT Aldose 1-epimerase OS=Neokomagataea tanensis OX=661191 GN=D5366_06360 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.51GFRR19 pKa = 11.84ARR21 pKa = 11.84KK22 pKa = 7.83ATVGGRR28 pKa = 11.84NILANRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.87GRR39 pKa = 11.84AKK41 pKa = 10.73LSAA44 pKa = 3.92

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2177

0

2177

737012

26

1510

338.5

36.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.939 ± 0.068

0.972 ± 0.015

5.294 ± 0.035

5.357 ± 0.053

3.687 ± 0.033

8.083 ± 0.052

2.513 ± 0.028

5.38 ± 0.039

3.487 ± 0.038

10.318 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.311 ± 0.023

3.359 ± 0.042

5.135 ± 0.038

3.752 ± 0.034

6.486 ± 0.052

6.373 ± 0.045

5.808 ± 0.044

7.02 ± 0.046

1.315 ± 0.019

2.409 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski