Canis familiaris papillomavirus 16

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Chipapillomavirus; Chipapillomavirus 2

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C5KYB3|A0A0C5KYB3_9PAPI Minor capsid protein L2 OS=Canis familiaris papillomavirus 16 OX=1619253 GN=L2 PE=3 SV=1
MM1 pKa = 7.39IGKK4 pKa = 9.23DD5 pKa = 3.29ATLKK9 pKa = 10.97DD10 pKa = 3.57IVLEE14 pKa = 4.12EE15 pKa = 4.14QPTPVDD21 pKa = 3.87EE22 pKa = 4.5LWCDD26 pKa = 3.46EE27 pKa = 4.51EE28 pKa = 5.02LAQSDD33 pKa = 4.22EE34 pKa = 4.43EE35 pKa = 4.48EE36 pKa = 4.33EE37 pKa = 4.6SGSQQTKK44 pKa = 8.56PFKK47 pKa = 10.41IQTYY51 pKa = 10.0CGNCNRR57 pKa = 11.84GIRR60 pKa = 11.84IVVLCTSEE68 pKa = 4.98GIRR71 pKa = 11.84TLQGLLCCNTSLCCPGCAASYY92 pKa = 10.01RR93 pKa = 11.84FEE95 pKa = 5.62HH96 pKa = 6.78GGG98 pKa = 3.29

Molecular weight: 10.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C5KYA9|A0A0C5KYA9_9PAPI Protein E7 OS=Canis familiaris papillomavirus 16 OX=1619253 GN=E7 PE=3 SV=1
MM1 pKa = 7.28TLSPPLTLSPALHH14 pKa = 6.78RR15 pKa = 11.84PPPTLVRR22 pKa = 11.84RR23 pKa = 11.84LKK25 pKa = 10.91DD26 pKa = 3.49LLTGNQNGWPEE37 pKa = 4.2EE38 pKa = 3.99VEE40 pKa = 4.02LQHH43 pKa = 6.69IRR45 pKa = 11.84RR46 pKa = 11.84PGPKK50 pKa = 10.15GQITPPASPPRR61 pKa = 11.84PRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84HH66 pKa = 5.02RR67 pKa = 11.84SRR69 pKa = 11.84RR70 pKa = 11.84NRR72 pKa = 11.84TPSPVFSWEE81 pKa = 3.95DD82 pKa = 3.54PYY84 pKa = 11.82GEE86 pKa = 4.53SQTPPPGSPLLTPHH100 pKa = 6.96DD101 pKa = 3.53RR102 pKa = 11.84WSPQSQPTPLSPCPGASPLPLSTPEE127 pKa = 4.11STHH130 pKa = 6.66PPTPYY135 pKa = 9.99QGLDD139 pKa = 3.22LDD141 pKa = 4.73LPRR144 pKa = 11.84PLPRR148 pKa = 11.84PTPLPLRR155 pKa = 11.84DD156 pKa = 3.94PRR158 pKa = 11.84PSLSEE163 pKa = 3.51QKK165 pKa = 10.44KK166 pKa = 10.14ALKK169 pKa = 9.82QALDD173 pKa = 3.73QVSKK177 pKa = 10.9DD178 pKa = 3.23AYY180 pKa = 10.79LLRR183 pKa = 11.84TEE185 pKa = 4.8LLEE188 pKa = 5.12DD189 pKa = 4.25LDD191 pKa = 4.84SFFAKK196 pKa = 10.54LGIVPHH202 pKa = 6.56LL203 pKa = 3.98

Molecular weight: 22.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2649

48

630

331.1

36.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.304 ± 0.443

2.039 ± 0.614

6.342 ± 0.537

5.512 ± 0.43

3.813 ± 0.589

7.173 ± 0.632

2.341 ± 0.196

3.926 ± 0.536

4.077 ± 0.723

8.758 ± 0.912

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.661 ± 0.32

3.624 ± 0.357

7.89 ± 1.398

4.002 ± 0.538

7.022 ± 0.438

7.55 ± 0.389

7.361 ± 0.307

6.644 ± 1.03

1.623 ± 0.312

2.341 ± 0.177
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski