Shewanella phage SppYZU05

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Chaseviridae; Nefertitivirinae; Yushanvirus; Shewanella virus SppYZU05

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6JTQ1|A0A1W6JTQ1_9CAUD Chaperone of endosialidase OS=Shewanella phage SppYZU05 OX=1970795 GN=SppYZU05_69 PE=4 SV=1
MM1 pKa = 7.77CNTSNLEE8 pKa = 4.31TIMSQLNTIEE18 pKa = 4.18TSSVQTLASTPSVNCWSEE36 pKa = 4.36AEE38 pKa = 3.96ISLVQYY44 pKa = 10.29TNADD48 pKa = 2.97WSILVQAVTNVASRR62 pKa = 11.84GVMSEE67 pKa = 4.16EE68 pKa = 4.2ALCSIPTPAQDD79 pKa = 4.01HH80 pKa = 6.9CDD82 pKa = 3.89SLHH85 pKa = 5.92GALMLLATRR94 pKa = 11.84EE95 pKa = 4.17KK96 pKa = 10.8FEE98 pKa = 4.07QFQIDD103 pKa = 3.6ALLDD107 pKa = 3.61EE108 pKa = 5.12VNFLVTGLTPSEE120 pKa = 4.12LDD122 pKa = 4.09EE123 pKa = 4.08VWMAANGEE131 pKa = 4.32EE132 pKa = 4.28FF133 pKa = 3.7

Molecular weight: 14.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6JTK2|A0A1W6JTK2_9CAUD Uncharacterized protein OS=Shewanella phage SppYZU05 OX=1970795 GN=SppYZU05_19 PE=4 SV=1
MM1 pKa = 7.39EE2 pKa = 5.21NSMNSRR8 pKa = 11.84QRR10 pKa = 11.84SYY12 pKa = 10.77YY13 pKa = 10.36LRR15 pKa = 11.84AKK17 pKa = 10.52RR18 pKa = 11.84IMKK21 pKa = 9.53FLKK24 pKa = 9.55TLPTLPTTATEE35 pKa = 4.69WYY37 pKa = 6.71PAHH40 pKa = 6.35VRR42 pKa = 11.84QARR45 pKa = 11.84ARR47 pKa = 11.84LKK49 pKa = 10.68CLEE52 pKa = 4.04SAQNCFVACGKK63 pKa = 9.51NHH65 pKa = 6.82DD66 pKa = 4.72AEE68 pKa = 4.51LLAPAIRR75 pKa = 11.84NVTKK79 pKa = 10.62RR80 pKa = 11.84INIALEE86 pKa = 4.12EE87 pKa = 3.88IEE89 pKa = 4.05IRR91 pKa = 11.84KK92 pKa = 9.67KK93 pKa = 10.37RR94 pKa = 11.84DD95 pKa = 2.92AEE97 pKa = 4.05MLHH100 pKa = 6.89ARR102 pKa = 11.84VQKK105 pKa = 10.0VRR107 pKa = 11.84LRR109 pKa = 11.84RR110 pKa = 11.84VPAQAGTVAFAGSGIDD126 pKa = 3.25QNLFATIVV134 pKa = 3.09

Molecular weight: 15.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

16193

30

1251

234.7

26.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.794 ± 0.539

1.198 ± 0.151

5.879 ± 0.224

6.2 ± 0.281

3.39 ± 0.243

6.812 ± 0.349

2.137 ± 0.147

5.299 ± 0.213

5.021 ± 0.28

8.38 ± 0.275

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.705 ± 0.14

4.23 ± 0.23

4.459 ± 0.179

4.15 ± 0.199

5.811 ± 0.209

5.824 ± 0.203

6.528 ± 0.267

7.361 ± 0.336

1.464 ± 0.129

3.359 ± 0.163
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski