Mycolicibacterium llatzerense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae; Mycolicibacterium

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5405 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D1LJF1|A0A0D1LJF1_9MYCO Amidohydrolase OS=Mycolicibacterium llatzerense OX=280871 GN=TL10_01940 PE=4 SV=1
MM1 pKa = 6.89THH3 pKa = 6.9NIHH6 pKa = 6.46IRR8 pKa = 11.84TVDD11 pKa = 3.05SSIRR15 pKa = 11.84YY16 pKa = 7.41PQALSYY22 pKa = 11.14GEE24 pKa = 4.28KK25 pKa = 10.66DD26 pKa = 3.17QILWVQIGDD35 pKa = 4.2DD36 pKa = 4.39ADD38 pKa = 3.96HH39 pKa = 7.25SDD41 pKa = 4.04TIYY44 pKa = 10.77FSPSYY49 pKa = 7.67WQQYY53 pKa = 9.22SVDD56 pKa = 3.79PHH58 pKa = 8.48SEE60 pKa = 4.16DD61 pKa = 4.85PLDD64 pKa = 4.67LDD66 pKa = 4.61FDD68 pKa = 4.55EE69 pKa = 7.01DD70 pKa = 6.01DD71 pKa = 4.01EE72 pKa = 7.21DD73 pKa = 4.58EE74 pKa = 6.52DD75 pKa = 5.42EE76 pKa = 6.31DD77 pKa = 5.81DD78 pKa = 6.05DD79 pKa = 4.62EE80 pKa = 4.74

Molecular weight: 9.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D1LS20|A0A0D1LS20_9MYCO MarR family transcriptional regulator OS=Mycolicibacterium llatzerense OX=280871 GN=TL10_00130 PE=4 SV=1
MM1 pKa = 7.39TLPSRR6 pKa = 11.84TPWGTGLTVSAFVAAVTAAAIIVLSLGLLRR36 pKa = 11.84VHH38 pKa = 7.14PLLAVGLNAVAVGGLAPTVWSWRR61 pKa = 11.84VRR63 pKa = 11.84PVWRR67 pKa = 11.84WFVWGAGLGVALGWVATLAIALSSS91 pKa = 3.46

Molecular weight: 9.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5405

0

5405

1698364

26

10330

314.2

33.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.947 ± 0.05

0.816 ± 0.009

6.277 ± 0.029

5.1 ± 0.036

3.115 ± 0.018

8.821 ± 0.038

2.264 ± 0.016

4.389 ± 0.026

2.398 ± 0.027

9.837 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.108 ± 0.015

2.357 ± 0.02

5.678 ± 0.031

3.131 ± 0.019

6.852 ± 0.038

5.395 ± 0.022

6.153 ± 0.026

8.651 ± 0.027

1.52 ± 0.011

2.193 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski