Marivita hallyeonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Marivita

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4131 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5RDH5|A0A1M5RDH5_9RHOB 5-aminolevulinate synthase OS=Marivita hallyeonensis OX=996342 GN=SAMN05443551_1699 PE=3 SV=1
MM1 pKa = 7.59NDD3 pKa = 3.41ASPHH7 pKa = 5.78IEE9 pKa = 4.24GAPLIAPSSTDD20 pKa = 2.93HH21 pKa = 6.59EE22 pKa = 5.42LYY24 pKa = 10.78DD25 pKa = 4.04QVVEE29 pKa = 4.41ACRR32 pKa = 11.84SVYY35 pKa = 10.64DD36 pKa = 3.59PEE38 pKa = 5.2IPVNIYY44 pKa = 10.88DD45 pKa = 4.22LGLVYY50 pKa = 10.37TIDD53 pKa = 3.25INAEE57 pKa = 3.77NEE59 pKa = 3.79VRR61 pKa = 11.84VIMTLTAPGCPVAGEE76 pKa = 4.1MPGWVAEE83 pKa = 4.75AIEE86 pKa = 4.23PLPGVKK92 pKa = 9.96HH93 pKa = 6.14VDD95 pKa = 3.16VDD97 pKa = 4.47LTWEE101 pKa = 4.65PPWGMDD107 pKa = 3.35MMSDD111 pKa = 3.68EE112 pKa = 4.89ARR114 pKa = 11.84LEE116 pKa = 4.14LGFMM120 pKa = 4.54

Molecular weight: 13.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5MJN7|A0A1M5MJN7_9RHOB Hydrogenase small subunit OS=Marivita hallyeonensis OX=996342 GN=SAMN05443551_0546 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4131

0

4131

1271774

25

2158

307.9

33.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.773 ± 0.043

0.907 ± 0.013

6.398 ± 0.032

5.889 ± 0.034

3.895 ± 0.021

8.405 ± 0.037

2.081 ± 0.019

5.27 ± 0.023

3.238 ± 0.031

9.905 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.787 ± 0.019

2.692 ± 0.023

5.035 ± 0.027

3.196 ± 0.022

6.37 ± 0.037

5.301 ± 0.027

5.771 ± 0.026

7.443 ± 0.029

1.424 ± 0.018

2.219 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski