Synechococcus sp. (strain WH7805)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2874 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4CWW8|A4CWW8_SYNPV Elp3 domain-containing protein OS=Synechococcus sp. (strain WH7805) OX=59931 GN=WH7805_09569 PE=4 SV=1
MM1 pKa = 7.3NLSNLIEE8 pKa = 4.32SLSAYY13 pKa = 9.62RR14 pKa = 11.84ARR16 pKa = 11.84SLHH19 pKa = 5.77TSLNQPEE26 pKa = 4.82EE27 pKa = 4.37PDD29 pKa = 3.83PDD31 pKa = 3.47ISSIDD36 pKa = 3.73NNPALTPIDD45 pKa = 3.51QPLTVARR52 pKa = 11.84GLLQNGATTPPSQQLNSTEE71 pKa = 4.28SFSEE75 pKa = 4.52AINGNNSITTEE86 pKa = 4.03EE87 pKa = 4.3EE88 pKa = 3.87ANEE91 pKa = 4.0TTNIEE96 pKa = 3.8FRR98 pKa = 11.84IEE100 pKa = 4.09SKK102 pKa = 10.51YY103 pKa = 10.99LHH105 pKa = 7.01AGRR108 pKa = 11.84CACFACSYY116 pKa = 10.94SRR118 pKa = 11.84DD119 pKa = 3.56SLEE122 pKa = 4.11TNRR125 pKa = 11.84EE126 pKa = 4.25SNSEE130 pKa = 4.1LNNTLSNADD139 pKa = 3.38PTIAFGTLNEE149 pKa = 4.15LSDD152 pKa = 4.01YY153 pKa = 9.5LTTGFWEE160 pKa = 4.19EE161 pKa = 3.61AGTYY165 pKa = 7.19TRR167 pKa = 11.84RR168 pKa = 11.84FNLGGSGLGAKK179 pKa = 9.84NGQLTYY185 pKa = 10.99NITGWADD192 pKa = 3.34DD193 pKa = 4.12SNGLSAEE200 pKa = 4.16RR201 pKa = 11.84QNLTRR206 pKa = 11.84EE207 pKa = 4.05VFNVYY212 pKa = 9.39EE213 pKa = 5.0AITGIEE219 pKa = 4.12FVEE222 pKa = 4.71VATEE226 pKa = 3.88GDD228 pKa = 4.31FRR230 pKa = 11.84FTDD233 pKa = 3.74NDD235 pKa = 3.64SGAYY239 pKa = 9.83AYY241 pKa = 10.81LGGGWYY247 pKa = 9.94DD248 pKa = 3.29QDD250 pKa = 4.71PNTGTIDD257 pKa = 3.46YY258 pKa = 9.12NAAIIDD264 pKa = 3.69YY265 pKa = 10.57SVINVASSWFYY276 pKa = 11.49GDD278 pKa = 3.68SSYY281 pKa = 11.9NSYY284 pKa = 9.32TPQTIFHH291 pKa = 7.24EE292 pKa = 4.72IGHH295 pKa = 6.51ALGLGHH301 pKa = 6.58QGQYY305 pKa = 10.39NAGNGNPTYY314 pKa = 10.38EE315 pKa = 4.43NSAQYY320 pKa = 11.53GNDD323 pKa = 2.93TWLTTMMSYY332 pKa = 9.87WSQTTNTNVNASRR345 pKa = 11.84AYY347 pKa = 10.07LQTPMTVDD355 pKa = 3.9WIALDD360 pKa = 3.81KK361 pKa = 11.2LYY363 pKa = 11.05GSQGYY368 pKa = 10.19GSFKK372 pKa = 10.64AFNGNTVYY380 pKa = 10.78GVGTNISSGTSEE392 pKa = 3.97IMNNFATMISDD403 pKa = 3.9TAYY406 pKa = 9.87TLVDD410 pKa = 3.66GSGYY414 pKa = 10.79DD415 pKa = 3.2ILNVSNYY422 pKa = 10.35SDD424 pKa = 3.48DD425 pKa = 3.68QFINLAPSEE434 pKa = 4.31LNGTLPSSSSIGGLVNNLTIGVGTILEE461 pKa = 4.17EE462 pKa = 4.95AIGGSGNDD470 pKa = 3.29TFLGNIADD478 pKa = 3.8NVFRR482 pKa = 11.84GGNGGDD488 pKa = 3.07RR489 pKa = 11.84FYY491 pKa = 11.54DD492 pKa = 3.5SFGSDD497 pKa = 2.67TYY499 pKa = 11.41YY500 pKa = 11.06GGSGTFDD507 pKa = 2.76TLYY510 pKa = 10.81FSEE513 pKa = 4.75NYY515 pKa = 10.3SDD517 pKa = 5.56FSIEE521 pKa = 4.03NLGTSLAFSRR531 pKa = 11.84NNSGLADD538 pKa = 4.04TDD540 pKa = 5.5LIWNDD545 pKa = 2.73IEE547 pKa = 5.2LVYY550 pKa = 11.06FNDD553 pKa = 4.72DD554 pKa = 3.55VIKK557 pKa = 9.85TYY559 pKa = 10.83QEE561 pKa = 3.9LLADD565 pKa = 3.95ITPINTPPTANDD577 pKa = 3.1VFVATSEE584 pKa = 4.37DD585 pKa = 4.05SNSVSGNFNANDD597 pKa = 4.43PDD599 pKa = 4.47SSDD602 pKa = 3.1QLTYY606 pKa = 10.73TITTAPTIGSVVVNSDD622 pKa = 3.12GTFTYY627 pKa = 11.06NFGNNFQSLGDD638 pKa = 3.87GDD640 pKa = 3.92STAVVFQYY648 pKa = 10.52IASDD652 pKa = 3.99DD653 pKa = 4.09NATDD657 pKa = 3.68SAPATVTITINGSNDD672 pKa = 2.91APILSGTPSALTNGTEE688 pKa = 4.67DD689 pKa = 3.05IAYY692 pKa = 10.01LLKK695 pKa = 10.96ASDD698 pKa = 4.24LLQGYY703 pKa = 9.81SDD705 pKa = 3.89IDD707 pKa = 3.94GDD709 pKa = 4.18TLSITSVTTASANGTLTPNGNGTWTYY735 pKa = 11.08TPTQDD740 pKa = 4.41LNGEE744 pKa = 4.46VVFSFVVSDD753 pKa = 4.19GNGGTANGSTSLTLDD768 pKa = 3.49PVEE771 pKa = 5.89DD772 pKa = 3.84EE773 pKa = 4.64VLLDD777 pKa = 3.78EE778 pKa = 5.44DD779 pKa = 4.05NNGIVDD785 pKa = 4.06GTEE788 pKa = 3.5LTAYY792 pKa = 10.44QLFSEE797 pKa = 5.14AGAITLKK804 pKa = 11.0NNAGQTYY811 pKa = 9.93NNSSSGNSDD820 pKa = 2.9VVAAIEE826 pKa = 4.21TDD828 pKa = 2.99NGFQVLLEE836 pKa = 4.3GTGSRR841 pKa = 11.84NDD843 pKa = 3.39TFYY846 pKa = 11.64VWNTNSNGVIIGGSGWKK863 pKa = 10.22SGDD866 pKa = 2.84IATRR870 pKa = 11.84LGWEE874 pKa = 3.9EE875 pKa = 4.07TFNFDD880 pKa = 3.69TNRR883 pKa = 11.84DD884 pKa = 3.52GTIGALILDD893 pKa = 4.83DD894 pKa = 5.09DD895 pKa = 4.67NNGIVDD901 pKa = 4.05GTEE904 pKa = 3.5LTAYY908 pKa = 10.44QLFSEE913 pKa = 5.14AGAITLKK920 pKa = 11.0NNAGQTYY927 pKa = 9.93NNSSSGNSDD936 pKa = 2.9VVAAIEE942 pKa = 4.21TDD944 pKa = 2.99NGFQVLLEE952 pKa = 4.3GTGSRR957 pKa = 11.84NDD959 pKa = 3.39TFYY962 pKa = 11.64VWNTNSNGVIIGGSGWKK979 pKa = 10.22SGDD982 pKa = 2.84IATRR986 pKa = 11.84LGWEE990 pKa = 3.9EE991 pKa = 4.07TFNFDD996 pKa = 3.69TNRR999 pKa = 11.84DD1000 pKa = 3.52GTIGALILDD1009 pKa = 4.83DD1010 pKa = 5.09DD1011 pKa = 4.67NNGIVDD1017 pKa = 4.05GTEE1020 pKa = 3.5LTAYY1024 pKa = 10.44QLFSEE1029 pKa = 5.14AGAITLKK1036 pKa = 11.0NNAGQTYY1043 pKa = 9.93NNSSSGNSDD1052 pKa = 2.9VVAAIEE1058 pKa = 4.21TDD1060 pKa = 2.99NGFQVLLEE1068 pKa = 4.3GTGSRR1073 pKa = 11.84NDD1075 pKa = 3.39TFYY1078 pKa = 11.64VWNTNSNGVITGGSGWKK1095 pKa = 10.22SGDD1098 pKa = 2.84IATRR1102 pKa = 11.84LGWEE1106 pKa = 3.9EE1107 pKa = 4.07TFNFDD1112 pKa = 3.69TNRR1115 pKa = 11.84DD1116 pKa = 3.52GTIGALILDD1125 pKa = 4.83DD1126 pKa = 5.09DD1127 pKa = 4.67NNGIVDD1133 pKa = 4.05GTEE1136 pKa = 3.5LTAYY1140 pKa = 10.44QLFSEE1145 pKa = 5.14AGAITLKK1152 pKa = 11.0NNAGQTYY1159 pKa = 9.93NNSSSGNSDD1168 pKa = 2.9VVAAIEE1174 pKa = 4.21TDD1176 pKa = 2.99NGFQVLLEE1184 pKa = 4.3GTGSRR1189 pKa = 11.84NDD1191 pKa = 3.39TFYY1194 pKa = 11.64VWNTNSNGVITGGSGWKK1211 pKa = 10.22SGDD1214 pKa = 2.84IATRR1218 pKa = 11.84LGWEE1222 pKa = 3.9EE1223 pKa = 4.07TFNFDD1228 pKa = 3.69TNRR1231 pKa = 11.84DD1232 pKa = 3.52GTIGALILDD1241 pKa = 4.83DD1242 pKa = 5.09DD1243 pKa = 4.67NNGIVDD1249 pKa = 4.05GTEE1252 pKa = 3.5LTAYY1256 pKa = 10.44QLFSEE1261 pKa = 5.14AGAITLKK1268 pKa = 11.0NNAGQTYY1275 pKa = 9.93NNSSSGNSDD1284 pKa = 2.9VVAAIEE1290 pKa = 4.21TDD1292 pKa = 2.99NGFQVLLEE1300 pKa = 4.3GTGSRR1305 pKa = 11.84NDD1307 pKa = 3.39TFYY1310 pKa = 11.62VWDD1313 pKa = 3.94TNSNGVITGGSGWKK1327 pKa = 9.67SGNIATRR1334 pKa = 11.84LGWEE1338 pKa = 3.9EE1339 pKa = 4.07TFNFDD1344 pKa = 3.69TNRR1347 pKa = 11.84DD1348 pKa = 3.61GTIGLPPSLSSPTLEE1363 pKa = 5.49ARR1365 pKa = 11.84FKK1367 pKa = 10.78DD1368 pKa = 3.47QWHH1371 pKa = 6.68LKK1373 pKa = 10.03DD1374 pKa = 4.03SSSGGANVASAWLLKK1389 pKa = 10.56NKK1391 pKa = 10.1SGSNIYY1397 pKa = 8.77GTGIHH1402 pKa = 6.59INVIDD1407 pKa = 5.64DD1408 pKa = 3.98GLDD1411 pKa = 3.03WRR1413 pKa = 11.84HH1414 pKa = 5.74QDD1416 pKa = 3.59LSTNYY1421 pKa = 9.32ISASSYY1427 pKa = 11.41DD1428 pKa = 3.95YY1429 pKa = 11.14VGKK1432 pKa = 10.56DD1433 pKa = 3.32NDD1435 pKa = 3.98PTPSSSADD1443 pKa = 3.0HH1444 pKa = 5.9GTAVAGVAAGYY1455 pKa = 8.67GHH1457 pKa = 6.88NGIGITGAAPNANISGQRR1475 pKa = 11.84LLGAGTARR1483 pKa = 11.84NEE1485 pKa = 3.67ASALTRR1491 pKa = 11.84TMNAVDD1497 pKa = 4.06IYY1499 pKa = 10.83SNSWGPNDD1507 pKa = 4.21NGRR1510 pKa = 11.84LQAAPARR1517 pKa = 11.84VLAALKK1523 pKa = 10.84DD1524 pKa = 3.79GVTNGRR1530 pKa = 11.84DD1531 pKa = 3.45GKK1533 pKa = 10.74GAIYY1537 pKa = 8.85TWAGGNGRR1545 pKa = 11.84NSNDD1549 pKa = 2.73NSNYY1553 pKa = 10.41DD1554 pKa = 3.06GYY1556 pKa = 11.73ANSRR1560 pKa = 11.84YY1561 pKa = 9.11VISVAAMTNRR1571 pKa = 11.84GRR1573 pKa = 11.84YY1574 pKa = 8.86SGYY1577 pKa = 9.99SEE1579 pKa = 4.74PGANVLVSAPSNGGTDD1595 pKa = 4.48AITTTSTNNSYY1606 pKa = 10.75IDD1608 pKa = 3.65NFGGTSSATPLVSGVIALMLEE1629 pKa = 4.42ANPNLTWRR1637 pKa = 11.84DD1638 pKa = 3.7VQHH1641 pKa = 6.33VLVNSSDD1648 pKa = 3.92VVDD1651 pKa = 4.38ASSNGWFTNGAEE1663 pKa = 4.44HH1664 pKa = 7.59DD1665 pKa = 4.13FSHH1668 pKa = 7.85DD1669 pKa = 3.57YY1670 pKa = 11.01GFGRR1674 pKa = 11.84INAEE1678 pKa = 3.74AAVALAKK1685 pKa = 9.29TWNNVGDD1692 pKa = 4.07EE1693 pKa = 4.29VSYY1696 pKa = 10.94SASTTPGIAIPDD1708 pKa = 3.67AGGGSISSTITISQDD1723 pKa = 2.37ITLEE1727 pKa = 4.22SVVIPILSDD1736 pKa = 2.87HH1737 pKa = 6.8TYY1739 pKa = 11.21AGDD1742 pKa = 3.55LTITLTSPEE1751 pKa = 4.2GTTAILSEE1759 pKa = 4.26GNRR1762 pKa = 11.84RR1763 pKa = 11.84DD1764 pKa = 3.44TSTLNFNFSAKK1775 pKa = 8.91TFWGEE1780 pKa = 3.65SSRR1783 pKa = 11.84GVWTLTINDD1792 pKa = 4.65LASLDD1797 pKa = 4.14TGTLDD1802 pKa = 3.18QWGLNLYY1809 pKa = 7.55GTQGTNFNAAITDD1822 pKa = 4.24SITGNEE1828 pKa = 4.26LEE1830 pKa = 4.65TFTGASGMTYY1840 pKa = 10.55ASKK1843 pKa = 10.56EE1844 pKa = 3.81ALEE1847 pKa = 4.19QIEE1850 pKa = 4.58GLSSYY1855 pKa = 10.46LSHH1858 pKa = 8.53IEE1860 pKa = 4.09DD1861 pKa = 4.66LLAEE1865 pKa = 4.46SPEE1868 pKa = 4.24KK1869 pKa = 10.44ATGDD1873 pKa = 3.66WLIGTQGPQDD1883 pKa = 3.51QIMRR1887 pKa = 11.84ASEE1890 pKa = 4.18LGISDD1895 pKa = 4.06SMTSQTFNAQNGISSFSMISALDD1918 pKa = 3.45PTEE1921 pKa = 5.83FIAQSLDD1928 pKa = 3.46SLGTNLSYY1936 pKa = 10.72AYY1938 pKa = 9.6PEE1940 pKa = 4.57LLHH1943 pKa = 5.99EE1944 pKa = 4.38TTTRR1948 pKa = 11.84SLIPSLEE1955 pKa = 3.97TSTFKK1960 pKa = 11.1AA1961 pKa = 3.7

Molecular weight: 208.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4CRW8|A4CRW8_SYNPV Uncharacterized protein OS=Synechococcus sp. (strain WH7805) OX=59931 GN=WH7805_13833 PE=4 SV=1
MM1 pKa = 7.55TKK3 pKa = 9.01RR4 pKa = 11.84TLGGTSRR11 pKa = 11.84KK12 pKa = 9.07RR13 pKa = 11.84KK14 pKa = 8.17RR15 pKa = 11.84VSGFRR20 pKa = 11.84VRR22 pKa = 11.84MRR24 pKa = 11.84SHH26 pKa = 6.21TGRR29 pKa = 11.84RR30 pKa = 11.84VIRR33 pKa = 11.84TRR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.66RR38 pKa = 11.84GRR40 pKa = 11.84SRR42 pKa = 11.84LSVV45 pKa = 3.08

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2874

0

2874

787820

20

8129

274.1

29.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.107 ± 0.064

1.226 ± 0.027

5.66 ± 0.074

5.659 ± 0.063

3.2 ± 0.042

8.267 ± 0.06

2.07 ± 0.045

4.456 ± 0.05

2.73 ± 0.044

12.315 ± 0.098

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.066 ± 0.033

2.945 ± 0.086

5.367 ± 0.063

4.614 ± 0.056

7.016 ± 0.098

6.65 ± 0.067

5.133 ± 0.147

6.998 ± 0.046

1.721 ± 0.035

1.801 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski