Providencia heimbachae ATCC 35613

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia heimbachae

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3766 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B7JYV8|A0A1B7JYV8_9GAMM 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Providencia heimbachae ATCC 35613 OX=1354272 GN=fabZ PE=3 SV=1
MM1 pKa = 7.34SKK3 pKa = 10.63VGIFVGTVYY12 pKa = 10.99GNSLAVAEE20 pKa = 4.3TAQDD24 pKa = 3.16ILEE27 pKa = 4.3QQGHH31 pKa = 4.82EE32 pKa = 3.91VVVFDD37 pKa = 5.6EE38 pKa = 4.7PTLSDD43 pKa = 3.27WQNYY47 pKa = 8.1NSGEE51 pKa = 4.23CVALIVTSSTGQGDD65 pKa = 4.16FPDD68 pKa = 5.07TIASLFYY75 pKa = 10.27EE76 pKa = 4.23IQDD79 pKa = 3.6VVGYY83 pKa = 10.44QPDD86 pKa = 3.55LRR88 pKa = 11.84YY89 pKa = 10.48GLIALGDD96 pKa = 3.58SSYY99 pKa = 11.64EE100 pKa = 4.24SFCGAGKK107 pKa = 10.56RR108 pKa = 11.84FDD110 pKa = 4.02EE111 pKa = 4.87LLTEE115 pKa = 4.18QSAIRR120 pKa = 11.84IGDD123 pKa = 3.48ILFIDD128 pKa = 5.58GIEE131 pKa = 3.88VDD133 pKa = 4.09APEE136 pKa = 4.67EE137 pKa = 4.13FAKK140 pKa = 10.5SWIEE144 pKa = 3.77SWSALLL150 pKa = 4.74

Molecular weight: 16.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B7JV20|A0A1B7JV20_9GAMM 50S ribosomal protein L15 OS=Providencia heimbachae ATCC 35613 OX=1354272 GN=rplO PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.58RR3 pKa = 11.84TFQPSLLKK11 pKa = 10.53RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.31GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.35GRR39 pKa = 11.84SSLTVSSKK47 pKa = 11.17

Molecular weight: 5.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3766

0

3766

1184252

37

3193

314.5

35.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.31 ± 0.046

1.062 ± 0.015

5.143 ± 0.033

5.884 ± 0.04

4.141 ± 0.028

6.871 ± 0.036

2.106 ± 0.022

7.268 ± 0.039

5.408 ± 0.038

10.443 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.695 ± 0.02

4.61 ± 0.031

4.088 ± 0.023

4.476 ± 0.035

4.59 ± 0.034

6.519 ± 0.034

5.376 ± 0.027

6.559 ± 0.03

1.297 ± 0.016

3.154 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski