Vibrio sp. C7

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; unclassified Vibrio

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7458 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A090R0Z4|A0A090R0Z4_9VIBR Uncharacterized protein OS=Vibrio sp. C7 OX=1001886 GN=JCM19233_80 PE=4 SV=1
MM1 pKa = 7.67GDD3 pKa = 4.04IDD5 pKa = 4.05PTDD8 pKa = 4.85PIEE11 pKa = 4.49PPDD14 pKa = 4.11GGFEE18 pKa = 4.01PPPIGGDD25 pKa = 3.29NPLPPVDD32 pKa = 4.49INPPDD37 pKa = 4.75EE38 pKa = 5.22IPPQDD43 pKa = 3.78GTDD46 pKa = 3.55SAVLQAIQNQHH57 pKa = 6.16RR58 pKa = 11.84DD59 pKa = 3.36MNSALNHH66 pKa = 6.16ISSDD70 pKa = 3.84LNHH73 pKa = 6.76GFADD77 pKa = 3.56VNNNLRR83 pKa = 11.84SINNTNNAIGQTIVDD98 pKa = 4.14QMNQDD103 pKa = 3.55YY104 pKa = 10.64EE105 pKa = 4.27IYY107 pKa = 9.87QAQRR111 pKa = 11.84DD112 pKa = 3.9LTLQNTAATYY122 pKa = 11.4NMASTISGSIDD133 pKa = 3.35GQTDD137 pKa = 3.18NLLDD141 pKa = 3.89GLSNHH146 pKa = 6.12GQSIVGAIDD155 pKa = 3.49GLGEE159 pKa = 4.08SLEE162 pKa = 4.41GVGGCTPNEE171 pKa = 4.06EE172 pKa = 4.12NNYY175 pKa = 7.74TCEE178 pKa = 3.91GRR180 pKa = 11.84TGMDD184 pKa = 3.55SDD186 pKa = 4.86LVWDD190 pKa = 3.43ITGDD194 pKa = 3.05INTQVDD200 pKa = 3.97SEE202 pKa = 4.44YY203 pKa = 11.14SSAFGSVVSGAQSYY217 pKa = 11.01IDD219 pKa = 3.96GGQTDD224 pKa = 3.82EE225 pKa = 4.75MKK227 pKa = 11.06GVMDD231 pKa = 3.88SAIGVLFGGLPNIGSCTPFSLPMPNGNEE259 pKa = 3.7VSFGCEE265 pKa = 3.37FSDD268 pKa = 4.01KK269 pKa = 10.66FKK271 pKa = 11.24LIASWLIYY279 pKa = 10.08IYY281 pKa = 8.42TVWTLIDD288 pKa = 3.92LMLNGINPAQRR299 pKa = 11.84KK300 pKa = 7.44EE301 pKa = 4.02SS302 pKa = 3.55

Molecular weight: 32.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A090RC31|A0A090RC31_9VIBR Oxygen-insensitive NAD(P)H nitroreductase OS=Vibrio sp. C7 OX=1001886 GN=JCM19233_3038 PE=4 SV=1
MM1 pKa = 6.9QQTGTQQRR9 pKa = 11.84VRR11 pKa = 11.84ALLLSGIRR19 pKa = 11.84SAVLWRR25 pKa = 11.84QVGGKK30 pKa = 8.99RR31 pKa = 11.84RR32 pKa = 11.84HH33 pKa = 6.43LIFSRR38 pKa = 11.84KK39 pKa = 9.72KK40 pKa = 9.28MVEE43 pKa = 3.58QAQILLARR51 pKa = 11.84MM52 pKa = 3.83

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7458

0

7458

1439835

37

1193

193.1

21.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.388 ± 0.034

1.062 ± 0.011

5.54 ± 0.03

6.46 ± 0.028

4.124 ± 0.025

6.721 ± 0.03

2.245 ± 0.016

6.236 ± 0.026

5.077 ± 0.024

10.182 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.903 ± 0.017

4.212 ± 0.022

3.785 ± 0.02

4.536 ± 0.025

4.611 ± 0.023

6.901 ± 0.025

5.495 ± 0.025

7.185 ± 0.027

1.276 ± 0.013

3.061 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski