Leptotrichia goodfellowii F0264

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia; Pseudoleptotrichia goodfellowii

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2374 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D0GN21|D0GN21_9FUSO Uncharacterized protein OS=Leptotrichia goodfellowii F0264 OX=596323 GN=HMPREF0554_1168 PE=4 SV=1
MM1 pKa = 7.1KK2 pKa = 10.14QYY4 pKa = 11.31AGTGYY9 pKa = 10.39DD10 pKa = 3.08RR11 pKa = 11.84KK12 pKa = 10.62YY13 pKa = 10.31EE14 pKa = 3.98AAASDD19 pKa = 3.81WRR21 pKa = 11.84DD22 pKa = 3.27KK23 pKa = 11.39QYY25 pKa = 11.76DD26 pKa = 4.22DD27 pKa = 3.77YY28 pKa = 11.78CAAQDD33 pKa = 3.62EE34 pKa = 4.79YY35 pKa = 11.69DD36 pKa = 3.57RR37 pKa = 11.84QIQEE41 pKa = 3.93KK42 pKa = 10.46FEE44 pKa = 4.15EE45 pKa = 4.55LFNEE49 pKa = 4.14LEE51 pKa = 4.54VYY53 pKa = 7.92HH54 pKa = 6.24TSYY57 pKa = 11.24YY58 pKa = 11.12DD59 pKa = 3.41KK60 pKa = 10.97LSEE63 pKa = 4.39NEE65 pKa = 3.9WIEE68 pKa = 3.88LKK70 pKa = 10.76DD71 pKa = 3.49YY72 pKa = 10.93FRR74 pKa = 11.84DD75 pKa = 3.57YY76 pKa = 11.0EE77 pKa = 4.51YY78 pKa = 11.51NLEE81 pKa = 4.3TTFSDD86 pKa = 4.03VIEE89 pKa = 4.72SYY91 pKa = 10.5QEE93 pKa = 3.8EE94 pKa = 4.93LIEE97 pKa = 4.97KK98 pKa = 8.95YY99 pKa = 11.25NFMII103 pKa = 5.17

Molecular weight: 12.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D0GJ94|D0GJ94_9FUSO Carbamate kinase OS=Leptotrichia goodfellowii F0264 OX=596323 GN=arcC PE=3 SV=1
MM1 pKa = 7.65AVPKK5 pKa = 10.55KK6 pKa = 9.29RR7 pKa = 11.84TSKK10 pKa = 10.63AKK12 pKa = 9.33RR13 pKa = 11.84NMRR16 pKa = 11.84RR17 pKa = 11.84AHH19 pKa = 6.89DD20 pKa = 4.44SIKK23 pKa = 10.61APNIIVEE30 pKa = 4.06ADD32 pKa = 3.3GTVRR36 pKa = 11.84RR37 pKa = 11.84PHH39 pKa = 6.69RR40 pKa = 11.84LNLEE44 pKa = 3.86TGVYY48 pKa = 9.97RR49 pKa = 11.84GRR51 pKa = 11.84QVLSTEE57 pKa = 4.21SPAADD62 pKa = 3.44SEE64 pKa = 4.52

Molecular weight: 7.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2374

0

2374

685734

32

2432

288.9

32.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.286 ± 0.058

0.646 ± 0.012

5.217 ± 0.036

8.317 ± 0.073

4.775 ± 0.051

6.673 ± 0.067

1.247 ± 0.021

9.481 ± 0.065

10.379 ± 0.065

8.713 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.027

6.319 ± 0.056

2.686 ± 0.029

2.243 ± 0.021

3.355 ± 0.031

5.839 ± 0.038

4.994 ± 0.043

6.282 ± 0.044

0.728 ± 0.018

4.31 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski