Candidimonas bauzanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Candidimonas

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5XCV2|A0A1M5XCV2_9BURK Uncharacterized protein OS=Candidimonas bauzanensis OX=658167 GN=SAMN04488135_106312 PE=4 SV=1
MM1 pKa = 7.85DD2 pKa = 6.75PILATLPPSLLALVEE17 pKa = 4.5GSLSNDD23 pKa = 2.79EE24 pKa = 4.32VSSDD28 pKa = 4.01EE29 pKa = 4.14EE30 pKa = 3.84MLAYY34 pKa = 10.24FIDD37 pKa = 3.95NGLTEE42 pKa = 4.41DD43 pKa = 3.76QARR46 pKa = 11.84QALTYY51 pKa = 10.19RR52 pKa = 11.84DD53 pKa = 3.41QYY55 pKa = 11.36LNNIYY60 pKa = 10.76LEE62 pKa = 4.48GFTPITSADD71 pKa = 3.8EE72 pKa = 4.11PLHH75 pKa = 6.08FNPHH79 pKa = 4.38TRR81 pKa = 11.84QFEE84 pKa = 3.94PDD86 pKa = 2.92

Molecular weight: 9.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5YQP0|A0A1M5YQP0_9BURK AraC-type DNA-binding protein OS=Candidimonas bauzanensis OX=658167 GN=SAMN04488135_11061 PE=4 SV=1
MM1 pKa = 7.21LQTWLWARR9 pKa = 11.84FKK11 pKa = 10.79GVKK14 pKa = 8.89RR15 pKa = 11.84TVSRR19 pKa = 11.84KK20 pKa = 6.22TRR22 pKa = 11.84QVHH25 pKa = 4.92RR26 pKa = 11.84LSRR29 pKa = 11.84RR30 pKa = 11.84TIQFSLVLVGAALVSFVSLGFAEE53 pKa = 5.04LVDD56 pKa = 4.26LALALNHH63 pKa = 6.74RR64 pKa = 11.84WLQAAPWAVWLILPFGLALLRR85 pKa = 11.84WWTLRR90 pKa = 11.84FAPNAGGSGIPQVIAALSLPADD112 pKa = 3.63SGRR115 pKa = 11.84RR116 pKa = 11.84SLVALSQAAWKK127 pKa = 10.62VPLTFLGLMCGASIGRR143 pKa = 11.84EE144 pKa = 4.25GPSVQVGAALMLAWGQACKK163 pKa = 10.69ALGVPLKK170 pKa = 10.62GIHH173 pKa = 5.21TEE175 pKa = 3.91EE176 pKa = 5.38LIATGAAGGLAAAFNAPLAGVIFAIEE202 pKa = 3.75EE203 pKa = 4.27LGRR206 pKa = 11.84GTALRR211 pKa = 11.84WQRR214 pKa = 11.84LVLIGVLAAGFIVVAFAGNNPYY236 pKa = 10.38FGEE239 pKa = 4.3FTGQALTHH247 pKa = 7.15DD248 pKa = 3.98MLGWTLLCGVACGVGGGLFSWLLSKK273 pKa = 10.79GAASFAPSIWRR284 pKa = 11.84GWIRR288 pKa = 11.84RR289 pKa = 11.84HH290 pKa = 5.2PVWLAFIMGLIVAVLGTLTNNSVYY314 pKa = 9.44GTGYY318 pKa = 10.64GVASTALAGQQLEE331 pKa = 4.51SAGFGPAKK339 pKa = 10.48LLATVASYY347 pKa = 9.18WAGIPGGIFTPALTTGAGIGAEE369 pKa = 4.07LASWVGGVADD379 pKa = 3.78QKK381 pKa = 11.59VLVLLSMAAFLAAATQSPLTASVVVMEE408 pKa = 4.61MTGSQPMLFWLLVCSLVASIVSRR431 pKa = 11.84LFSPLPFYY439 pKa = 10.58HH440 pKa = 6.82HH441 pKa = 6.01SAGRR445 pKa = 11.84FRR447 pKa = 11.84QQVRR451 pKa = 11.84EE452 pKa = 3.95VDD454 pKa = 3.33RR455 pKa = 11.84AQAKK459 pKa = 9.63

Molecular weight: 48.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5118

0

5118

1690431

39

5775

330.3

35.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.518 ± 0.047

0.922 ± 0.012

5.264 ± 0.027

5.036 ± 0.034

3.518 ± 0.022

8.523 ± 0.051

2.166 ± 0.018

5.158 ± 0.027

3.285 ± 0.027

10.784 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.52 ± 0.019

2.777 ± 0.027

5.104 ± 0.028

3.977 ± 0.021

6.676 ± 0.039

5.808 ± 0.033

4.853 ± 0.034

7.21 ± 0.028

1.392 ± 0.015

2.508 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski