Listeria virus P61

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; unclassified Pecentumvirus

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M9Z2T8|A0A6M9Z2T8_9CAUD DUF4379 domain-containing protein OS=Listeria virus P61 OX=2697238 PE=4 SV=1
MM1 pKa = 8.16DD2 pKa = 4.63SNKK5 pKa = 9.97FLMGLNKK12 pKa = 9.86FLTEE16 pKa = 3.74IDD18 pKa = 4.21KK19 pKa = 9.39VTSAYY24 pKa = 10.55GEE26 pKa = 4.07DD27 pKa = 3.4ANYY30 pKa = 9.69EE31 pKa = 3.62ISFIRR36 pKa = 11.84EE37 pKa = 3.29KK38 pKa = 11.03CADD41 pKa = 3.99LDD43 pKa = 3.87EE44 pKa = 5.07GAKK47 pKa = 9.62QDD49 pKa = 4.56CEE51 pKa = 3.97EE52 pKa = 4.06TDD54 pKa = 3.78FFEE57 pKa = 4.34GAEE60 pKa = 4.68YY61 pKa = 9.94ISQMQTGEE69 pKa = 4.24DD70 pKa = 3.72CFEE73 pKa = 4.16GYY75 pKa = 9.85ILRR78 pKa = 11.84KK79 pKa = 9.45IKK81 pKa = 9.58NTDD84 pKa = 2.4WCLCITYY91 pKa = 10.4AII93 pKa = 4.41

Molecular weight: 10.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M9Z2Y9|A0A6M9Z2Y9_9CAUD Uncharacterized protein OS=Listeria virus P61 OX=2697238 PE=4 SV=1
MM1 pKa = 7.54KK2 pKa = 10.29KK3 pKa = 10.63LSRR6 pKa = 11.84DD7 pKa = 3.59EE8 pKa = 3.73IKK10 pKa = 10.47KK11 pKa = 8.84RR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 9.99YY15 pKa = 10.55FINEE19 pKa = 4.07AKK21 pKa = 10.23RR22 pKa = 11.84VTHH25 pKa = 6.21IRR27 pKa = 11.84AGDD30 pKa = 3.4RR31 pKa = 11.84RR32 pKa = 11.84IATGSRR38 pKa = 11.84ICTLCGRR45 pKa = 11.84SLSSQKK51 pKa = 10.43RR52 pKa = 11.84STGEE56 pKa = 3.6TFASVNHH63 pKa = 4.94IHH65 pKa = 7.42CYY67 pKa = 9.89FNEE70 pKa = 3.87LLIVNLCEE78 pKa = 5.26DD79 pKa = 3.22ATSCYY84 pKa = 9.65RR85 pKa = 11.84RR86 pKa = 11.84HH87 pKa = 5.75EE88 pKa = 4.21RR89 pKa = 11.84SS90 pKa = 3.0

Molecular weight: 10.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

190

0

190

39911

38

1313

210.1

23.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.733 ± 0.223

0.639 ± 0.06

5.941 ± 0.117

8.261 ± 0.275

3.924 ± 0.124

5.896 ± 0.271

1.501 ± 0.097

6.63 ± 0.207

8.609 ± 0.272

8.514 ± 0.203

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.438 ± 0.085

5.628 ± 0.132

2.841 ± 0.127

3.393 ± 0.197

4.122 ± 0.134

6.795 ± 0.173

6.299 ± 0.174

7.326 ± 0.186

0.967 ± 0.055

4.477 ± 0.138
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski