Suicoccus acidiformans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Suicoccus

Average proteome isoelectric point is 5.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2209 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A347WJM2|A0A347WJM2_9LACT Uncharacterized protein OS=Suicoccus acidiformans OX=2036206 GN=CL176_04305 PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 10.53KK3 pKa = 10.41LLLLSASMLALSSQGFAPSVHH24 pKa = 6.11AQNNADD30 pKa = 3.73VMAVTQTQQSQIQTDD45 pKa = 3.88YY46 pKa = 11.27DD47 pKa = 3.41QAIQSFQSQYY57 pKa = 10.6PNTHH61 pKa = 5.55ITDD64 pKa = 3.38VDD66 pKa = 3.27IHH68 pKa = 6.0LHH70 pKa = 5.09QEE72 pKa = 3.7TGHH75 pKa = 5.5FVVRR79 pKa = 11.84VLGADD84 pKa = 3.35QSQEE88 pKa = 4.11YY89 pKa = 10.07QLITYY94 pKa = 10.2NGEE97 pKa = 3.63QFNASRR103 pKa = 11.84PLEE106 pKa = 4.28EE107 pKa = 5.33ANSTSQTLNPAEE119 pKa = 4.27LASLEE124 pKa = 4.45TVTQNAIQQAQSDD137 pKa = 4.24KK138 pKa = 11.01AVNWSLEE145 pKa = 3.92GHH147 pKa = 6.85EE148 pKa = 4.96DD149 pKa = 3.25TDD151 pKa = 3.73APRR154 pKa = 11.84WDD156 pKa = 3.33VTFIEE161 pKa = 5.18DD162 pKa = 3.61NQEE165 pKa = 3.64KK166 pKa = 10.17NVAVDD171 pKa = 3.36ATTGEE176 pKa = 4.75VIDD179 pKa = 4.28STQDD183 pKa = 3.01SATQEE188 pKa = 4.27SADD191 pKa = 3.8TQQAPNASQNTDD203 pKa = 2.45QDD205 pKa = 3.56RR206 pKa = 11.84SDD208 pKa = 3.78NSDD211 pKa = 2.59ARR213 pKa = 11.84HH214 pKa = 6.77FYY216 pKa = 10.01RR217 pKa = 11.84QFYY220 pKa = 10.45SDD222 pKa = 3.8YY223 pKa = 9.96NGTRR227 pKa = 11.84PTVRR231 pKa = 11.84DD232 pKa = 2.96AGYY235 pKa = 10.36QIRR238 pKa = 11.84NTPSNSSQTTGPATSTVGQYY258 pKa = 11.37DD259 pKa = 3.73DD260 pKa = 6.13DD261 pKa = 5.1DD262 pKa = 3.85WDD264 pKa = 5.68DD265 pKa = 3.93YY266 pKa = 12.15DD267 pKa = 6.67DD268 pKa = 4.92YY269 pKa = 12.0DD270 pKa = 6.52DD271 pKa = 5.65YY272 pKa = 12.14DD273 pKa = 6.15DD274 pKa = 6.6YY275 pKa = 12.14DD276 pKa = 5.63DD277 pKa = 6.14DD278 pKa = 3.94WDD280 pKa = 6.21DD281 pKa = 3.97YY282 pKa = 12.14DD283 pKa = 6.05DD284 pKa = 4.65YY285 pKa = 12.01NDD287 pKa = 3.53YY288 pKa = 11.54DD289 pKa = 5.69DD290 pKa = 6.13YY291 pKa = 12.07DD292 pKa = 6.1GDD294 pKa = 4.67DD295 pKa = 3.78DD296 pKa = 4.58

Molecular weight: 33.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A347WHK8|A0A347WHK8_9LACT Guanine permease OS=Suicoccus acidiformans OX=2036206 GN=CL176_00155 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 8.89KK9 pKa = 7.7RR10 pKa = 11.84QRR12 pKa = 11.84KK13 pKa = 7.95KK14 pKa = 8.03VHH16 pKa = 5.72GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.14NGRR28 pKa = 11.84NVLKK32 pKa = 10.51RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.59GRR39 pKa = 11.84KK40 pKa = 8.75KK41 pKa = 10.39LASS44 pKa = 3.43

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2209

0

2209

678505

28

3877

307.2

34.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.106 ± 0.057

0.508 ± 0.013

5.956 ± 0.047

7.785 ± 0.06

3.978 ± 0.034

6.637 ± 0.05

2.097 ± 0.025

7.225 ± 0.052

4.97 ± 0.05

9.656 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.601 ± 0.031

4.359 ± 0.038

3.646 ± 0.053

4.821 ± 0.047

4.449 ± 0.042

5.785 ± 0.038

5.546 ± 0.054

6.992 ± 0.044

0.876 ± 0.017

4.007 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski