Solimonas aquatica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae; Solimonas

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3891 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9L435|A0A1H9L435_9GAMM 2-methylisocitrate lyase OS=Solimonas aquatica OX=489703 GN=prpB PE=3 SV=1
MM1 pKa = 8.27PYY3 pKa = 10.27RR4 pKa = 11.84KK5 pKa = 8.46WRR7 pKa = 11.84CVICDD12 pKa = 3.45WVYY15 pKa = 11.6DD16 pKa = 4.16EE17 pKa = 6.23AVGAPDD23 pKa = 5.44DD24 pKa = 5.15GIAPGTRR31 pKa = 11.84WDD33 pKa = 4.59DD34 pKa = 4.29VPDD37 pKa = 3.3TWSCPDD43 pKa = 3.56CGASKK48 pKa = 11.23GDD50 pKa = 3.74FEE52 pKa = 4.88MVEE55 pKa = 3.96ADD57 pKa = 3.25

Molecular weight: 6.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9KTA5|A0A1H9KTA5_9GAMM DNA replication and repair protein RecF OS=Solimonas aquatica OX=489703 GN=recF PE=3 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.96RR4 pKa = 11.84TYY6 pKa = 9.58QPKK9 pKa = 9.34KK10 pKa = 9.24LRR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 7.83RR15 pKa = 11.84THH17 pKa = 5.96GFRR20 pKa = 11.84ARR22 pKa = 11.84MATVGGRR29 pKa = 11.84LVLSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.89RR42 pKa = 11.84LIPP45 pKa = 4.02

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3891

0

3891

1330244

39

4111

341.9

37.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.765 ± 0.051

1.005 ± 0.013

5.097 ± 0.036

5.543 ± 0.039

3.388 ± 0.024

8.199 ± 0.048

2.205 ± 0.023

4.252 ± 0.024

3.04 ± 0.031

11.711 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.104 ± 0.018

2.602 ± 0.028

5.222 ± 0.034

4.607 ± 0.033

7.425 ± 0.048

5.635 ± 0.047

4.447 ± 0.038

6.703 ± 0.032

1.436 ± 0.019

2.615 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski