Frateuria aurantia (strain ATCC 33424 / DSM 6220 / KCTC 2777 / LMG 1558 / NBRC 3245 / NCIMB 13370) (Acetobacter aurantius)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Frateuria; Frateuria aurantia

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3098 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H8L640|H8L640_FRAAD Uncharacterized protein OS=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / KCTC 2777 / LMG 1558 / NBRC 3245 / NCIMB 13370) OX=767434 GN=Fraau_1461 PE=4 SV=1
MM1 pKa = 7.24KK2 pKa = 10.3RR3 pKa = 11.84VLTPEE8 pKa = 4.28AEE10 pKa = 4.18AEE12 pKa = 4.07RR13 pKa = 11.84ADD15 pKa = 4.06FDD17 pKa = 5.21SEE19 pKa = 4.28FDD21 pKa = 3.98GGNCSCHH28 pKa = 5.72LTPPCGSCTHH38 pKa = 7.26PGNPDD43 pKa = 2.92NQAEE47 pKa = 4.31DD48 pKa = 3.6DD49 pKa = 4.31SAWMEE54 pKa = 4.04VDD56 pKa = 3.9DD57 pKa = 6.43DD58 pKa = 4.81YY59 pKa = 12.17DD60 pKa = 3.82GVEE63 pKa = 4.05EE64 pKa = 4.19

Molecular weight: 7.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H8L6X7|H8L6X7_FRAAD Uncharacterized protein OS=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / KCTC 2777 / LMG 1558 / NBRC 3245 / NCIMB 13370) OX=767434 GN=Fraau_2539 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 9.47PANFRR7 pKa = 11.84RR8 pKa = 11.84LINLWPPYY16 pKa = 9.45LLNSIRR22 pKa = 11.84VQSIARR28 pKa = 11.84DD29 pKa = 3.3WSEE32 pKa = 3.67ARR34 pKa = 11.84VVLHH38 pKa = 6.18LRR40 pKa = 11.84PWNRR44 pKa = 11.84NIMRR48 pKa = 11.84TQFGGNLFAMIDD60 pKa = 4.01PMPMLLAMRR69 pKa = 11.84QLGTHH74 pKa = 4.44YY75 pKa = 10.65HH76 pKa = 5.31VWDD79 pKa = 3.89KK80 pKa = 11.15AAEE83 pKa = 4.06IDD85 pKa = 4.27FVAPGRR91 pKa = 11.84SHH93 pKa = 5.1VHH95 pKa = 4.42ATIRR99 pKa = 11.84MPACAMDD106 pKa = 5.12EE107 pKa = 4.13IRR109 pKa = 11.84SAAQTGDD116 pKa = 3.16KK117 pKa = 10.03VLRR120 pKa = 11.84WFDD123 pKa = 3.4IDD125 pKa = 3.19ICHH128 pKa = 7.42ADD130 pKa = 3.87GSPVAHH136 pKa = 6.23VRR138 pKa = 11.84KK139 pKa = 9.46QLYY142 pKa = 9.48VRR144 pKa = 11.84LKK146 pKa = 8.79SQHH149 pKa = 5.27RR150 pKa = 3.66

Molecular weight: 17.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3098

0

3098

1035801

29

2518

334.3

36.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.22 ± 0.062

0.907 ± 0.015

5.458 ± 0.03

4.94 ± 0.046

3.144 ± 0.026

8.464 ± 0.042

2.632 ± 0.02

4.528 ± 0.033

2.533 ± 0.031

11.461 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.345 ± 0.021

2.381 ± 0.029

5.41 ± 0.036

4.591 ± 0.035

7.369 ± 0.04

5.897 ± 0.048

4.711 ± 0.041

6.904 ± 0.031

1.65 ± 0.021

2.454 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski