Litoricola lipolytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Litoricolaceae; Litoricola

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2331 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2Q8T5|A0A5Q2Q8T5_9GAMM Saccharopine dehydrogenase family protein OS=Litoricola lipolytica OX=418701 GN=GH975_11525 PE=4 SV=1
MM1 pKa = 7.15PTVKK5 pKa = 10.2FEE7 pKa = 4.39YY8 pKa = 10.26GDD10 pKa = 3.35EE11 pKa = 4.32TFEE14 pKa = 4.02VTAEE18 pKa = 3.85IGEE21 pKa = 4.53SVMMAAARR29 pKa = 11.84NRR31 pKa = 11.84VPGIDD36 pKa = 3.63ADD38 pKa = 4.08CGGGCSCATCHH49 pKa = 6.58VYY51 pKa = 10.73APDD54 pKa = 3.94GAALPAPSDD63 pKa = 3.71MEE65 pKa = 5.53KK66 pKa = 11.3DD67 pKa = 3.34MLDD70 pKa = 3.49FADD73 pKa = 4.51ALTDD77 pKa = 3.94ASRR80 pKa = 11.84LSCQIVVTPSMDD92 pKa = 2.64GVTYY96 pKa = 9.05VIPKK100 pKa = 9.82LL101 pKa = 3.64

Molecular weight: 10.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2QAU6|A0A5Q2QAU6_9GAMM Uncharacterized protein OS=Litoricola lipolytica OX=418701 GN=GH975_02045 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.52RR12 pKa = 11.84KK13 pKa = 8.26RR14 pKa = 11.84THH16 pKa = 5.92GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.39NGRR28 pKa = 11.84LVLKK32 pKa = 10.32RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.89GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2331

0

2331

732204

31

4212

314.1

34.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.819 ± 0.058

0.986 ± 0.018

6.188 ± 0.045

5.133 ± 0.051

3.487 ± 0.035

8.288 ± 0.047

2.164 ± 0.024

4.991 ± 0.033

3.024 ± 0.035

10.754 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.574 ± 0.023

2.957 ± 0.032

4.655 ± 0.034

4.212 ± 0.033

6.346 ± 0.052

5.794 ± 0.037

5.223 ± 0.045

7.657 ± 0.045

1.496 ± 0.022

2.252 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski