Termite associated circular virus 3

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses

Average proteome isoelectric point is 9.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1E318|A0A2P1E318_9VIRU Putative capsid protein OS=Termite associated circular virus 3 OX=2108551 PE=4 SV=1
MM1 pKa = 7.72PFRR4 pKa = 11.84WQGKK8 pKa = 7.07YY9 pKa = 10.68LFLTYY14 pKa = 9.87PRR16 pKa = 11.84SDD18 pKa = 3.38FSLDD22 pKa = 3.16EE23 pKa = 4.17SLHH26 pKa = 5.44FFRR29 pKa = 11.84SQAKK33 pKa = 7.85QATFIRR39 pKa = 11.84VSSEE43 pKa = 3.39RR44 pKa = 11.84HH45 pKa = 5.41EE46 pKa = 5.3DD47 pKa = 3.71GSPHH51 pKa = 5.63RR52 pKa = 11.84HH53 pKa = 4.84VFIAFDD59 pKa = 3.38KK60 pKa = 10.82RR61 pKa = 11.84FSFTNEE67 pKa = 2.9RR68 pKa = 11.84RR69 pKa = 11.84FDD71 pKa = 3.46FRR73 pKa = 11.84EE74 pKa = 3.67RR75 pKa = 11.84HH76 pKa = 5.91PNIQSRR82 pKa = 11.84VDD84 pKa = 3.58NPAACLDD91 pKa = 3.98YY92 pKa = 11.03VSKK95 pKa = 11.25DD96 pKa = 3.46GVFVDD101 pKa = 4.27YY102 pKa = 11.4GSVPDD107 pKa = 4.88FNTSTSEE114 pKa = 3.75PRR116 pKa = 11.84EE117 pKa = 3.9SRR119 pKa = 11.84NQLWGRR125 pKa = 11.84LLDD128 pKa = 3.94EE129 pKa = 4.81ATSASHH135 pKa = 7.28FLQLVRR141 pKa = 11.84EE142 pKa = 3.99NSPYY146 pKa = 11.33DD147 pKa = 3.11FATRR151 pKa = 11.84VSSLFTIRR159 pKa = 11.84TAPYY163 pKa = 8.66AQNASSSSATLVPEE177 pKa = 4.63RR178 pKa = 11.84PAGRR182 pKa = 11.84GRR184 pKa = 11.84SGTISTSRR192 pKa = 11.84GSSTWTSLTPRR203 pKa = 11.84PATSSSTTARR213 pKa = 11.84SSGSRR218 pKa = 11.84TTSPGSGAGGEE229 pKa = 4.44FEE231 pKa = 5.02ATDD234 pKa = 3.48KK235 pKa = 11.38YY236 pKa = 10.48RR237 pKa = 11.84GKK239 pKa = 9.33RR240 pKa = 11.84TLVWQRR246 pKa = 11.84KK247 pKa = 7.06SCIVLCNRR255 pKa = 11.84GLLWDD260 pKa = 3.62WRR262 pKa = 11.84ASEE265 pKa = 4.9EE266 pKa = 4.39YY267 pKa = 10.31RR268 pKa = 11.84DD269 pKa = 3.75DD270 pKa = 5.43KK271 pKa = 11.61DD272 pKa = 3.55WFDD275 pKa = 4.7HH276 pKa = 6.51NVIICDD282 pKa = 3.95LNKK285 pKa = 10.51KK286 pKa = 8.34LWRR289 pKa = 11.84YY290 pKa = 9.93DD291 pKa = 3.12EE292 pKa = 5.26SYY294 pKa = 11.69

Molecular weight: 33.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1E318|A0A2P1E318_9VIRU Putative capsid protein OS=Termite associated circular virus 3 OX=2108551 PE=4 SV=1
MM1 pKa = 6.95PQRR4 pKa = 11.84YY5 pKa = 5.29TRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84SRR11 pKa = 11.84YY12 pKa = 7.54RR13 pKa = 11.84STRR16 pKa = 11.84RR17 pKa = 11.84VRR19 pKa = 11.84KK20 pKa = 7.57VVRR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84VPKK29 pKa = 9.5ATMKK33 pKa = 9.8MVRR36 pKa = 11.84SVANRR41 pKa = 11.84QIMKK45 pKa = 9.27ATEE48 pKa = 3.86TKK50 pKa = 10.28RR51 pKa = 11.84NVRR54 pKa = 11.84LEE56 pKa = 4.48EE57 pKa = 3.91NWSPIPSNSTGSQYY71 pKa = 10.97TIANIFAQIGGGGTASGTNATQLIGDD97 pKa = 4.15TFFNPLFKK105 pKa = 10.93AKK107 pKa = 10.02LRR109 pKa = 11.84YY110 pKa = 9.45FIDD113 pKa = 3.38WNRR116 pKa = 11.84VRR118 pKa = 11.84SLNGSGTGVLPVQLYY133 pKa = 9.57CWIVAANDD141 pKa = 3.56ILPLGVTPNNYY152 pKa = 7.81FTISPQPNFFLTSGGTAPTFNGDD175 pKa = 3.01NVRR178 pKa = 11.84VIRR181 pKa = 11.84KK182 pKa = 7.04WSKK185 pKa = 9.37TINPPSIVVGAGTVVTNGASLYY207 pKa = 10.38KK208 pKa = 10.62KK209 pKa = 10.34NITVKK214 pKa = 10.3FRR216 pKa = 11.84GSKK219 pKa = 8.64TFEE222 pKa = 4.15SDD224 pKa = 2.91SSGGLGFGLRR234 pKa = 11.84GWNFYY239 pKa = 10.26MITGYY244 pKa = 11.49AMPYY248 pKa = 10.19GFALSGTPLLPLVDD262 pKa = 3.89VRR264 pKa = 11.84VDD266 pKa = 3.28RR267 pKa = 11.84YY268 pKa = 11.1LYY270 pKa = 10.79FKK272 pKa = 10.97DD273 pKa = 3.47PP274 pKa = 3.7

Molecular weight: 30.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

568

274

294

284.0

32.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.81 ± 0.215

0.88 ± 0.33

4.93 ± 1.288

3.345 ± 1.208

5.986 ± 0.328

7.394 ± 1.343

1.232 ± 0.79

4.049 ± 0.913

4.225 ± 0.567

6.514 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.232 ± 0.614

5.106 ± 1.172

5.458 ± 0.479

2.641 ± 0.055

10.211 ± 0.463

10.563 ± 2.092

8.099 ± 0.423

6.162 ± 1.197

2.289 ± 0.297

3.873 ± 0.325
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski